Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_M03
         (741 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   7.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   7.0  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    22   7.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   9.2  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 512 GKPDDATDSENEDE 553
           GKP + TD +++DE
Sbjct: 79  GKPKEETDDKDDDE 92


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 12/48 (25%), Positives = 25/48 (52%)
 Frame = +2

Query: 326 KMSNTVITNYTDLNGPSTKAESSVVVIVNKDGSLSVDQNLLGTLMGTD 469
           ++ + +++NY  L  P +    +VVV +    S  +D NL   ++ T+
Sbjct: 23  RLYDDLLSNYNRLIRPVSNNNDTVVVKLGLRLSQLIDLNLKDQILTTN 70


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 7.0
 Identities = 11/18 (61%), Positives = 11/18 (61%)
 Frame = -2

Query: 686 LFSLVSILNDCNISAPLY 633
           LFS  SILN C IS   Y
Sbjct: 128 LFSTASILNLCVISLDRY 145


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 9.2
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 584  SYYGEPNSIIKY 619
            SYYG P+S ++Y
Sbjct: 1067 SYYGVPHSTLEY 1078


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,795
Number of Sequences: 438
Number of extensions: 4156
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)