Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L23
         (847 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...   209   2e-56
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    26   0.50 
L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein pro...    24   2.0  
DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.              22   8.2  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       22   8.2  

>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score =  209 bits (511), Expect = 2e-56
 Identities = 98/139 (70%), Positives = 115/139 (82%), Gaps = 1/139 (0%)
 Frame = +3

Query: 432 PHIVRALDRNQ-KVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRI 608
           PH  R  + +  K+  DIL  IG TPL+KL+ +PK  G+KCE+YAKCEFLNPGGSVKDRI
Sbjct: 22  PHTCRTKNGDYTKIMPDILTAIGQTPLIKLNNIPKSYGIKCEIYAKCEFLNPGGSVKDRI 81

Query: 609 AYRMFLDAEQKGILKPGKSVIVEPTSGNTGIGLALAAAVRGYRCIIVLPEKMSDEKVNTL 788
           AYRM  DAE KG+LKPG   I+EPTSGNTGIGLA+AAAVRGY+CIIV+PEKMSDEK++TL
Sbjct: 82  AYRMIQDAEDKGLLKPG-CTIIEPTSGNTGIGLAMAAAVRGYKCIIVMPEKMSDEKISTL 140

Query: 789 VAXGAEIIRTPTEAAWDSP 845
            A GA+IIRTPTEA+W SP
Sbjct: 141 YALGAKIIRTPTEASWHSP 159


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 25.8 bits (54), Expect = 0.50
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 829 ASVGVRIISAPXATSVFTFSS-DIFSGNTIMHLYPLTAAASASPIPVLPDVGSTMTDLPG 653
           +S GV ++    A+ V   +S  +    T  HL   +  A+A+P P    VGS +    G
Sbjct: 9   SSAGVGVVGGTIASVVAGAASLTLVKAETPEHLAGTSTTAAATPTPPSVPVGSAVAGTAG 68


>L01587-1|AAA27734.1|   69|Apis mellifera zinc finger protein
           protein.
          Length = 69

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = -3

Query: 398 VRCAIFSIHMVRHVAVYRFYCLYLKFTIHYCINL 297
           V  ++ + H+  H  VY++ C    +   YC +L
Sbjct: 27  VNKSMLNSHLKSHSNVYQYRCANCTYATKYCHSL 60


>DQ435328-1|ABD92643.1|  143|Apis mellifera OBP11 protein.
          Length = 143

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 12/53 (22%), Positives = 20/53 (37%)
 Frame = +3

Query: 462 QKVHSDILNVIGNTPLVKLSKLPKDEGLKCEMYAKCEFLNPGGSVKDRIAYRM 620
           +K   +    I +    +  + P+DE LKC      E  N       +I Y +
Sbjct: 41  KKCIGETKTTIEDVEATEYGEFPEDEKLKCYFNCVLEKFNVMDKKNGKIRYNL 93


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -3

Query: 371 MVRHVAVYRFYCLYLKFTIHYCINL 297
           M R +A +R + LYL   +  CI++
Sbjct: 110 MCRIMAFFRMFGLYLSSFVLVCISM 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 231,982
Number of Sequences: 438
Number of extensions: 4916
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)