Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L21
         (774 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    27   2.3  
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    27   3.0  
SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding p...    26   5.2  
SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    25   9.1  
SPCC16C4.17 |mug123||meiotically upregulated gene Mug123|Schizos...    25   9.1  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 341  CLIKNVYATQLISSFIMFANHTLTHCGIRTLQCQRPRAYQKSRH 210
            C    V+  + + S I+F    +  C    L C +P  Y+  RH
Sbjct: 908  CNNSEVFPARFLYSRILFEGVHIEECTQYVLSCLKPLGYELKRH 951


>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 751

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = -2

Query: 620 RTEAGAEPCKIVNRSRDSKAPGKAVPIGSGGGPAP 516
           RT  G+EP K  NRS  SK       +GS  G  P
Sbjct: 289 RTANGSEPTKKSNRSEQSKTVAN-TNVGSKNGTTP 322


>SPBC29A10.02 |spo5|mrb1, mug12, SPBC365.18|meiotic RNA-binding
           protein 1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 567

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -3

Query: 583 IDLETAKPPVKPSLLVQAGDRHRSILECVSKRTRCLYFQ 467
           + L  A PP  PS+   + D  +S +E  S RTR +Y +
Sbjct: 264 VGLHPAIPPAIPSMFPMSHDNKKSNMESTS-RTRNVYIR 301


>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 22/75 (29%), Positives = 33/75 (44%)
 Frame = -2

Query: 755 ETSSLCAVASCNSIKLAFLFGGSNGSGTA*RAGTVCFVEKGPYVARTEAGAEPCKIVNRS 576
           +   LCAVA C S++   L      +G A R      +    YV   EAGA+ C++V   
Sbjct: 94  QNRGLCAVAQCESLRYKLL------AGLAVRRAAYGVLR---YV--MEAGAKGCEVVISG 142

Query: 575 RDSKAPGKAVPIGSG 531
           +   A  K++    G
Sbjct: 143 KLRAARAKSMKFADG 157


>SPCC16C4.17 |mug123||meiotically upregulated gene
           Mug123|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 235

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = -3

Query: 124 MSRTKPRRKSPSAMKTSHMARVSSKGLWYTRSQ 26
           + R  P   SPS   +S   + SSKGL   RS+
Sbjct: 53  IGRVAPLHSSPSIKSSSQNGKSSSKGLGGMRSR 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,162,196
Number of Sequences: 5004
Number of extensions: 65122
Number of successful extensions: 179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 373338084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)