Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L21
(774 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1486 - 27472226-27472867,27472951-27473862 32 0.58
03_02_0599 - 9730204-9730314,9730766-9731549,9731631-9732051,973... 30 1.8
11_06_0610 - 25449085-25453284 29 4.1
03_06_0389 - 33567385-33567969,33568052-33568402,33568646-335688... 29 4.1
11_01_0780 - 6531579-6531608,6531732-6532064,6533219-6533325,653... 29 5.4
07_03_0476 - 18547223-18548187,18548743-18549958 29 5.4
03_01_0012 - 101584-101898,102274-102531,102932-103474 29 5.4
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 28 7.2
09_03_0074 + 12103454-12103613,12104102-12104183,12105145-121052... 28 7.2
02_01_0014 - 87215-87280,87358-87495,87593-87721,87801-87869,879... 28 7.2
08_01_0892 - 8778097-8778236,8778390-8778486,8778568-8778747,877... 28 9.5
05_03_0348 - 12792940-12793335 28 9.5
04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243 28 9.5
03_06_0657 + 35333866-35333965,35334089-35334429 28 9.5
>08_02_1486 - 27472226-27472867,27472951-27473862
Length = 517
Score = 31.9 bits (69), Expect = 0.58
Identities = 15/24 (62%), Positives = 16/24 (66%)
Frame = +1
Query: 508 RWNGAGPPPEPIGTALPGALLSLD 579
R GAG PP P G L G+LLSLD
Sbjct: 29 RGRGAGLPPGPTGLPLVGSLLSLD 52
>03_02_0599 -
9730204-9730314,9730766-9731549,9731631-9732051,
9732139-9732385,9733730-9733921,9734071-9734204,
9734316-9734477,9736162-9736200,9737507-9737825
Length = 802
Score = 30.3 bits (65), Expect = 1.8
Identities = 22/77 (28%), Positives = 32/77 (41%)
Frame = -2
Query: 641 EKGPYVARTEAGAEPCKIVNRSRDSKAPGKAVPIGSGGGPAPFHLGVCFKKNPLSLFSK* 462
++GP A G + VN D G GSG G + GVC+++ L+ F +
Sbjct: 699 QRGPSTA-PNVGRPNMETVNGIVDENGAGGGNGSGSGSGNDLYQNGVCYREAALNKFRQK 757
Query: 461 TSTANPVPVSRNRSNKR 411
N R +S KR
Sbjct: 758 RKVRNFGKKVRYQSRKR 774
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 29.1 bits (62), Expect = 4.1
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +1
Query: 526 PPPEPIGTALPGALLSLDRFTILQGSAPASVRATYGPFSTKQTVPARYAVP-DPLEPPK 699
PPP P+ + LP S ++ P P T + PA+ + P +P+ PP+
Sbjct: 1032 PPPSPVESVLPPVKSSPPHAPVISEPPPTKSSPPQVPV-TSEPPPAKSSPPHEPISPPE 1089
>03_06_0389 -
33567385-33567969,33568052-33568402,33568646-33568848,
33569044-33569299,33569459-33569671,33569757-33569882,
33569965-33570102,33570191-33570536,33570630-33570896,
33571192-33571378,33571457-33571556,33571659-33571909,
33572242-33572428,33572562-33572573
Length = 1073
Score = 29.1 bits (62), Expect = 4.1
Identities = 19/47 (40%), Positives = 26/47 (55%)
Frame = -2
Query: 443 VPVSRNRSNKRRMFEVLQDRYLCASVHLVYDIVNCLIKNVYATQLIS 303
VP+S +R N RM VL+ LC +H Y I N ++N Y L+S
Sbjct: 258 VPISSSRINPYRMVIVLRLIVLCIFLH--YRITN-PVRNAYPLWLLS 301
>11_01_0780 -
6531579-6531608,6531732-6532064,6533219-6533325,
6534267-6534316,6535110-6537065,6537458-6538209
Length = 1075
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/55 (30%), Positives = 27/55 (49%)
Frame = +3
Query: 192 GDSFRLVSTFLVSSWPLTLQRADPAVRECVISEHNKRRDQLSRVNIFN*TINDVI 356
G S + + +VSS PL LQR + C+ S K QL R+ I + +++
Sbjct: 712 GTSMYMDCSSIVSSPPLCLQRLELLPTICIFSRLPKWIGQLKRLRILKIVVRELL 766
>07_03_0476 - 18547223-18548187,18548743-18549958
Length = 726
Score = 28.7 bits (61), Expect = 5.4
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = +1
Query: 592 LQGSAPASVRATYGPFSTKQTVPARYAVPDPLEPPKRNASLIELQEATAHRLDVSAHLXF 771
L +APA A P S+ T+ A ++PDP + P+ + +A A + H+ F
Sbjct: 225 LASAAPAVSLALLPPSSSHHTIAAVASLPDPRDGPRTDMHFETEDDAYAFYNRYAEHVGF 284
>03_01_0012 - 101584-101898,102274-102531,102932-103474
Length = 371
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 631 GPFSTKQTVPARYAVPDPLEPPKRNASLIELQEATAHRL 747
G ++ +Q +PA AVP P A+ I L+ TAH L
Sbjct: 137 GSYAQEQIIPASVAVPLPPSIDHNTAAAIMLKGMTAHVL 175
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 28.3 bits (60), Expect = 7.2
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 1/57 (1%)
Frame = +1
Query: 466 FENKDSGFFLKHTPRWN-GAGPPPEPIGTALPGALLSLDRFTILQGSAPASVRATYG 633
F + S L + RW+ PPP P+ + L S + F + Q + P +R G
Sbjct: 392 FSDGTSSGSLSASSRWDFEVSPPPPPMAATISEFLSSNESFAMQQRARPDELRTDRG 448
>09_03_0074 +
12103454-12103613,12104102-12104183,12105145-12105200,
12105671-12106048,12106402-12106565
Length = 279
Score = 28.3 bits (60), Expect = 7.2
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = -2
Query: 614 EAGAEPCKIVNRSRDSKAPGKAVPIGSGGGPAP 516
E P + R R +A P+GSGGG AP
Sbjct: 145 ERRRRPTLLQRRGRRCRAAAALPPVGSGGGRAP 177
>02_01_0014 -
87215-87280,87358-87495,87593-87721,87801-87869,
87962-88042,88133-88237,88338-88568,88665-90197,
90660-90752,91477-92887,93184-93305,93479-93718,
94521-94682,94770-94937,95025-95141,95266-95376,
95919-96506
Length = 1787
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = -2
Query: 632 PYVARTEAGAEPCKIVNRSRDSKAPGKAVPIGSGGGPAP 516
P V R+EA ++P + +S PG A S PAP
Sbjct: 858 PRVQRSEAASKPTVPSGNNSESGIPGTAAGASSTAAPAP 896
>08_01_0892 -
8778097-8778236,8778390-8778486,8778568-8778747,
8779138-8779247,8781153-8781294,8782298-8782686,
8782752-8782834,8783524-8785244,8785894-8786040,
8786121-8786264,8786669-8786741,8787413-8787633
Length = 1148
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = -1
Query: 720 FNQTCIPFRWLQWIGYCIT 664
FN+ IP W QW G C T
Sbjct: 718 FNKEVIPKLWFQWSGRCTT 736
>05_03_0348 - 12792940-12793335
Length = 131
Score = 27.9 bits (59), Expect = 9.5
Identities = 12/34 (35%), Positives = 15/34 (44%)
Frame = -2
Query: 614 EAGAEPCKIVNRSRDSKAPGKAVPIGSGGGPAPF 513
E P + R R+ P+G GGG APF
Sbjct: 48 EERVPPSRATVRVRELGIEASTAPVGKGGGAAPF 81
>04_04_1561 - 34435565-34436530,34437373-34437473,34438099-34438243
Length = 403
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = -2
Query: 566 KAPGKAVPIGSGGGPAPFHLG 504
+ PGKAVP +GGGP G
Sbjct: 107 RRPGKAVPGAAGGGPGSARFG 127
>03_06_0657 + 35333866-35333965,35334089-35334429
Length = 146
Score = 27.9 bits (59), Expect = 9.5
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = -2
Query: 635 GPYVARTEAGAEPCKIVNRSRDSKAPGKAVPIGSGGGPA 519
G V + A EPC +R S+ GKA + SG A
Sbjct: 51 GEVVVASTAADEPCANAEAARGSEPAGKAAQMSSGNQQA 89
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,562,121
Number of Sequences: 37544
Number of extensions: 475756
Number of successful extensions: 1498
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1448
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1497
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2068401984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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