Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L21
         (774 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28992-4|AAA68392.1|  100|Caenorhabditis elegans Hypothetical pr...    32   0.40 
AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical...    30   2.1  
AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.      29   3.7  
AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor o...    29   3.7  
AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine re...    29   4.9  
AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine re...    29   4.9  
U73946-1|AAB18328.1|  452|Caenorhabditis elegans CeLIM-7 protein.      28   6.4  
AF067210-1|AAC16985.1|  452|Caenorhabditis elegans Lim domain fa...    28   6.4  
Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical p...    28   8.5  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    28   8.5  

>U28992-4|AAA68392.1|  100|Caenorhabditis elegans Hypothetical
           protein T05C1.5 protein.
          Length = 100

 Score = 32.3 bits (70), Expect = 0.40
 Identities = 16/41 (39%), Positives = 27/41 (65%)
 Frame = -3

Query: 499 VSKRTRCLYFQNELRQLIPFL*VGTGAINAACLKSCRTGIY 377
           +S++  C+YF++ L Q +PF  + +  I+A  LK+CRT  Y
Sbjct: 1   MSQKLCCIYFRDML-QFLPFFMLSSVIISAQELKTCRTVSY 40


>AL161712-19|CAC70143.2|  261|Caenorhabditis elegans Hypothetical
           protein Y66D12A.24 protein.
          Length = 261

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 19/53 (35%), Positives = 27/53 (50%)
 Frame = +1

Query: 538 PIGTALPGALLSLDRFTILQGSAPASVRATYGPFSTKQTVPARYAVPDPLEPP 696
           P G +   A  S++  TI Q  + AS+ A YG  S+  ++P R A P    PP
Sbjct: 13  PYGYSPAPAAPSME-ITINQNQSSASLPARYGNSSSGSSLPRRCAPPSAPPPP 64


>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -2

Query: 389 DRYLCASVHLVYDIVNCLIKNVYATQLISSFIMFANHTLTHCGIRT 252
           +RYLC+ ++   DI  CL+ ++    ++ +  +  + TLT    RT
Sbjct: 374 ERYLCSELNSKKDIGTCLLLDLLFNSIVFNLPVMKSMTLTELANRT 419


>AF308860-1|AAG45416.1| 1475|Caenorhabditis elegans SOP-3 protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 641 EKGPYVARTEAGAEPCKIVNRSRDSKAPGKAVPIGSGGG 525
           E  P VA  +  A+P K   + R  K PG+  P G G G
Sbjct: 677 EPPPSVAPYDFPADPSKKQRKQRAKKQPGEEPPAGRGKG 715


>AC024201-13|AAF36027.2| 1475|Caenorhabditis elegans Suppressor of
           pal-1 protein 3,isoform a protein.
          Length = 1475

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -2

Query: 641 EKGPYVARTEAGAEPCKIVNRSRDSKAPGKAVPIGSGGG 525
           E  P VA  +  A+P K   + R  K PG+  P G G G
Sbjct: 677 EPPPSVAPYDFPADPSKKQRKQRAKKQPGEEPPAGRGKG 715


>AF000299-3|AAW88403.1|  342|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform a protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = -2

Query: 437 VSRNRSNKRRMFEVLQDRY--LCASVHLVYDIVNCLIKNVYATQLISSFIMFANHTLTHC 264
           ++R R     +F V    Y  + A+  L+  ++ C+I  V +T +++S+++F+  T+T  
Sbjct: 59  INRQRDELTSLFPVTDHFYKMIKATNLLIAVVIICIIFTVISTSVVNSWLIFSILTITGL 118

Query: 263 GIRTL 249
            + TL
Sbjct: 119 ILFTL 123


>AF000299-2|AAC47981.2|  324|Caenorhabditis elegans Serpentine
           receptor, class z protein24, isoform b protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/65 (26%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
 Frame = -2

Query: 437 VSRNRSNKRRMFEVLQDRY--LCASVHLVYDIVNCLIKNVYATQLISSFIMFANHTLTHC 264
           ++R R     +F V    Y  + A+  L+  ++ C+I  V +T +++S+++F+  T+T  
Sbjct: 59  INRQRDELTSLFPVTDHFYKMIKATNLLIAVVIICIIFTVISTSVVNSWLIFSILTITGL 118

Query: 263 GIRTL 249
            + TL
Sbjct: 119 ILFTL 123


>U73946-1|AAB18328.1|  452|Caenorhabditis elegans CeLIM-7 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 463 HFENKDSG-FFLKHTPRWNGAGPPPEP 540
           H +N   G   ++H  +WNG  PPP P
Sbjct: 359 HIDNTLGGPIDIQHFAQWNGTPPPPPP 385


>AF067210-1|AAC16985.1|  452|Caenorhabditis elegans Lim domain
           family protein 7 protein.
          Length = 452

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = +1

Query: 463 HFENKDSG-FFLKHTPRWNGAGPPPEP 540
           H +N   G   ++H  +WNG  PPP P
Sbjct: 359 HIDNTLGGPIDIQHFAQWNGTPPPPPP 385


>Z99281-40|CAB16512.1|  268|Caenorhabditis elegans Hypothetical
           protein Y57G11C.11a protein.
          Length = 268

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -2

Query: 581 RSRDSKAPGKAVPIGSGGG 525
           R  D KAP + V +GSGGG
Sbjct: 69  RKSDQKAPPRLVDVGSGGG 87


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
           protein ZC84.6 protein.
          Length = 1474

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +3

Query: 258 DPAVRECVISEHNK-RRDQLSRVN 326
           D  VREC+I+EHN   +D L R N
Sbjct: 779 DGTVRECLINEHNSCPKDYLCRFN 802


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,264
Number of Sequences: 27780
Number of extensions: 393995
Number of successful extensions: 1035
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1034
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)