Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L19
(849 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c... 32 0.12
SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 29 1.1
SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|ch... 27 2.5
SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster ... 27 2.5
SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch... 27 3.4
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 27 4.4
SPAC17G8.10c |dma1||mitotic spindle checkpoint protein Dma1|Schi... 27 4.4
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch... 27 4.4
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 26 5.9
SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyce... 26 5.9
SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyce... 26 7.8
>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
3|||Manual
Length = 625
Score = 31.9 bits (69), Expect = 0.12
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +2
Query: 494 FDDVIVLRQVVSNFTYNYVHDNTGLRILEVSGFDKVRLPIYQTTSHNGF 640
FDD VLR+V+SN T V + L + VSG +V P TS F
Sbjct: 449 FDDGTVLREVLSN-TTTTVGSSGALHVTVVSGLPQVYYPEASLTSFGNF 496
>SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 569
Score = 28.7 bits (61), Expect = 1.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 366 PRRDVAEPLESALTSNPPTLSRTK 295
PRR A LESA PP+L R K
Sbjct: 196 PRRSTAATLESAYEERPPSLPRRK 219
>SPBC17G9.08c |csx2||Arf GAP protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 870
Score = 27.5 bits (58), Expect = 2.5
Identities = 17/76 (22%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -1
Query: 423 STLRHGKSWFLKKRLL*I----QPRRDVAEPLESALTSNPPTLSRTK-LFLNTSVCVFCT 259
++++HG + + K L + P R ++ E T +P + K + + C C
Sbjct: 631 TSVKHGPTSTIGKALQRVASVTSPSRHNSDSKEKKQTKSPSLVKTLKEMHSSDQSCADCN 690
Query: 258 STLTTDWQVVKFPYSL 211
+T +W + FP L
Sbjct: 691 TTARVEWCAINFPVVL 706
>SPAC1F7.11c |||transcription factor zf-fungal binuclear cluster
type |Schizosaccharomyces pombe|chr 1|||Manual
Length = 782
Score = 27.5 bits (58), Expect = 2.5
Identities = 24/66 (36%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Frame = -1
Query: 291 FLNTSVCVFCTSTLTTDWQVVKFPYSL-RQFPMISFLV--IATRGFTSPTD*YVIAPSLF 121
FL+ + VFC TL T +V+ YSL +F + + L I+ GFT D V+A L
Sbjct: 257 FLSLTYMVFCLGTLFTSPVLVRNRYSLAHEFFLRAQLCFDISVSGFTPSLD-SVVAVMLM 315
Query: 120 FMNSLF 103
S F
Sbjct: 316 AQYSYF 321
>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 298
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/57 (22%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 374 HNNLFFRNHDLPCLKVEGRQSSPYQEVTIYRNYFTRNRV-PFDDVIVLRQVVSNFTY 541
H+ ++ + K+ Q + + +Y N +T + PF++++ L+Q+ N TY
Sbjct: 178 HSGIYAMEEAIEEYKILNTQGD-FSNIWVYSNNYTYCKYWPFNEILSLKQIRHNQTY 233
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 4.4
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Frame = -1
Query: 411 HGKSWFLKKRLL*IQPRRDVAEPLESALTSNPPTLSRTKLFLNTSVCVFCTSTLTTDWQ- 235
+GKS FL L+ + + LE S TL +KLF S+ + +STL D Q
Sbjct: 247 NGKS-FLYHMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPSLSEYLSSTLFLDLQA 305
Query: 234 --VVKFPYSLRQFPMISFL 184
+V P S + F + L
Sbjct: 306 FCIVALPQSAKLFQKVKAL 324
>SPAC17G8.10c |dma1||mitotic spindle checkpoint protein
Dma1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 26.6 bits (56), Expect = 4.4
Identities = 14/61 (22%), Positives = 25/61 (40%)
Frame = -1
Query: 273 CVFCTSTLTTDWQVVKFPYSLRQFPMISFLVIATRGFTSPTD*YVIAPSLFFMNSLFDML 94
CV L W++ PY+L +F + LV+ + P + + + +LF
Sbjct: 150 CVRARVELNNSWKIKLSPYNLNEFKRMQELVLCGSSESGPPECCICLMPVLPCQALFVAP 209
Query: 93 C 91
C
Sbjct: 210 C 210
>SPBP19A11.04c |mor2|cps12|morphogenesis protein
Mor2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2196
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 515 RQVVSNFTYNYVHDNTGLRILEVSGF 592
+Q++ F N+V D GL+IL + GF
Sbjct: 1693 QQIMETFPQNWVGDYQGLQILILKGF 1718
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 710 VDNIFFNPDNDYEMITVNRSISLXLWRTR 796
+ ++ FNP ND+ + T + ++ LW R
Sbjct: 284 IHSVAFNPHNDFILATCSTDKTIALWDLR 312
>SPAC1039.01 |||amino acid permease, unknown 5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 26.2 bits (55), Expect = 5.9
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Frame = +2
Query: 59 ISAIGFNRDVQHNISNSEFIKNRDGAITYQS-VGEVNPLVAITRNEIIGNCL 211
ISAI + S + RDG + + +G VNP N +I NC+
Sbjct: 361 ISAIIMGQSALIASSRIAYSYARDGILPFSGWIGTVNPYTQTPVNAVICNCI 412
>SPBC887.05c |cwf29||RNA-binding protein Cwf29|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 217
Score = 25.8 bits (54), Expect = 7.8
Identities = 15/42 (35%), Positives = 24/42 (57%)
Frame = +1
Query: 112 IHKEQRRRDHVSICRRSESSGRDH*ERDHRKLSQAVRKLHDL 237
IH+E+RR+ RS+ S + R HR+ S++ R+ DL
Sbjct: 175 IHREKRRKLKHESSDRSDKSDSNRHSRHHRRHSRS-RRHRDL 215
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,211,501
Number of Sequences: 5004
Number of extensions: 64681
Number of successful extensions: 195
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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