Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L19
         (849 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_1137 + 30652967-30653183,30653281-30653485,30653696-306537...    29   4.7  
02_01_0509 + 3694689-3695683,3695799-3695946,3696864-3696943,369...    29   4.7  
02_02_0299 - 8726024-8726101,8726460-8726534,8726836-8726965,872...    29   6.2  
08_02_0014 + 11255063-11255167,11256589-11256858,11257882-112582...    28   8.2  
08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817           28   8.2  
02_04_0633 - 24616563-24617279                                         28   8.2  
01_07_0290 - 42542201-42542359,42542443-42542551,42542729-425435...    28   8.2  

>03_05_1137 +
           30652967-30653183,30653281-30653485,30653696-30653786,
           30653904-30654046,30654186-30654429,30654536-30654640,
           30654985-30655167,30655255-30655459,30655552-30656036
          Length = 625

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 49/218 (22%), Positives = 88/218 (40%), Gaps = 10/218 (4%)
 Frame = +2

Query: 11  GASAVHGF--IAEVVTLPISA-IGFNRD--VQHNISNSEFIKNRDGAITYQSVGEVNPLV 175
           G  AVHG   + +    P +  +G  RD  +   I  +  ++ R   I Y       P V
Sbjct: 115 GIDAVHGHNNVYKATIFPHNVGLGATRDPDLVKRIGEATALEVRATGIPYVFA----PCV 170

Query: 176 AITRNEIIGNCLKLYGNFTTCQSVVRVDVQNTQTLVFRNNLVRDNVGG-LLVRADSR--- 343
           A+ R+   G C + Y         +   +   Q  V  N++ R  VGG   V A ++   
Sbjct: 171 AVCRDPRWGRCYESYSEDPKVVQSLTTLISGLQGDVPSNDVGRPYVGGSKKVAACAKHYV 230

Query: 344 GSATSLRGWIHNNLFFRNHDLPCLKVEGRQSSPYQEV-TIYRNYFTRNRVPFDDVIVLRQ 520
           G   +++G   NN     H L  + +    +S  + V T+  +Y + N V          
Sbjct: 231 GDGGTVKGINENNTIIDTHGLLTIHMPPYYNSIIRGVSTVMVSYSSWNGVKMH---ANHH 287

Query: 521 VVSNFTYNYVHDNTGLRILEVSGFDKVRLPIYQTTSHN 634
           ++++F  N +    G  I +  G D++  P ++  S++
Sbjct: 288 LITDFLKNKLRFR-GFVISDWQGIDRITSPPHKNYSYS 324


>02_01_0509 +
           3694689-3695683,3695799-3695946,3696864-3696943,
           3697214-3698062,3698193-3698337,3698426-3698677,
           3698780-3699089,3699415-3699524
          Length = 962

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 208 TVSYDLVPSDRDQRIHFADRLIRDRAVSVLYEFAVRY 98
           T   DL P DR +R+    RL  D   S   +FA+ Y
Sbjct: 251 TAEADLAPDDRSRRMKTLQRLYNDHLNSGTAQFAIYY 287


>02_02_0299 -
           8726024-8726101,8726460-8726534,8726836-8726965,
           8727406-8727601,8727894-8727965,8728087-8728159,
           8728240-8728344,8728502-8728624,8728730-8728806,
           8729064-8729108,8729214-8729433
          Length = 397

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +2

Query: 311 VGGLLVRADSRGSATSLRGWIHNNLF-FRNHDLPCLKVEGRQSSPYQEVTIYRNYFTRNR 487
           V G      SRG  TS   + +N ++    H L   K+  +  SPYQEV ++ +      
Sbjct: 62  VSGWFTEPRSRGGKTSKVQYYNNPMWPGEAHSLKVEKILYQGKSPYQEVLVFESSTYGKV 121

Query: 488 VPFDDVIVL 514
           +  D ++ L
Sbjct: 122 LVLDGIVQL 130


>08_02_0014 +
           11255063-11255167,11256589-11256858,11257882-11258285,
           11259011-11259242
          Length = 336

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/46 (30%), Positives = 26/46 (56%)
 Frame = +2

Query: 659 DREGRATIVAGTAGQSYVDNIFFNPDNDYEMITVNRSISLXLWRTR 796
           DR G+ +  +  A  S +++I F+P+N Y + T +R  +  +W  R
Sbjct: 181 DRIGKVS-TSWNAHASRINSIDFHPENTYMLATSSRDGTACMWDLR 225


>08_01_0244 + 2016548-2017101,2017392-2019681,2019785-2019817
          Length = 958

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 14/25 (56%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
 Frame = +1

Query: 649 LRNRSRRPSHYSRGN-SRSELRRQY 720
           LRNR  R  HY  G   RSE RR+Y
Sbjct: 290 LRNRPPRGGHYDEGTWERSEPRREY 314


>02_04_0633 - 24616563-24617279
          Length = 238

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +3

Query: 237 ASPLLEWTYRIRKRW-CLGIIWCEITSAGCSL 329
           ASP   W+ R R+R  C G+ WC + S    L
Sbjct: 11  ASPADHWSPRHRRRCGCHGVNWCRVVSTAIVL 42


>01_07_0290 -
           42542201-42542359,42542443-42542551,42542729-42543516,
           42543601-42543744,42543840-42544013,42544056-42544369,
           42544467-42544636,42544916-42545043,42545125-42545185,
           42545473-42545642,42545783-42547387,42547479-42547631,
           42547747-42547905,42548066-42548236,42548357-42548404,
           42548509-42548624,42548885-42549029,42549122-42549220
          Length = 1570

 Score = 28.3 bits (60), Expect = 8.2
 Identities = 11/28 (39%), Positives = 20/28 (71%)
 Frame = +3

Query: 627 RITVSIRTTQQIAKAEPL*SREQPVRVT 710
           RI +SI + ++I KA+P+   E+P+ +T
Sbjct: 22  RINLSITSNEEILKAQPVNELEKPIPIT 49


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,701,516
Number of Sequences: 37544
Number of extensions: 406560
Number of successful extensions: 1061
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2362209084
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)