Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L19
(849 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical pr... 113 1e-25
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr... 30 2.4
Z35601-2|CAA84666.1| 259|Caenorhabditis elegans Hypothetical pr... 30 2.4
AC024843-8|AAM48560.1| 726|Caenorhabditis elegans Hypothetical ... 30 2.4
AC024843-7|AAF60843.2| 743|Caenorhabditis elegans Hypothetical ... 30 2.4
AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical ... 30 2.4
U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase... 29 3.2
AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical ... 29 3.2
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 7.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 7.3
Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical pr... 28 9.6
Z81533-9|CAB04341.1| 307|Caenorhabditis elegans Hypothetical pr... 28 9.6
AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical... 28 9.6
AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein. 28 9.6
>Z81463-4|CAB03852.2| 3118|Caenorhabditis elegans Hypothetical protein
C06B8.7 protein.
Length = 3118
Score = 113 bits (273), Expect = 1e-25
Identities = 83/269 (30%), Positives = 122/269 (45%), Gaps = 3/269 (1%)
Frame = +2
Query: 5 ANGASAVHGFIAEVVTLPISAIGFNRDVQHNISNSEFIKNRDGAITYQSVGEVNPLVAIT 184
A A V+GFIAEV LP +A + I S N GAI Y ++GE++P + I
Sbjct: 2343 ATAADGVYGFIAEVSALPSNAEQHTVG-EIIIRGSRVDHNDRGAIEYSNLGEMSPNLVIE 2401
Query: 185 RNEIIGNCLKLYGNFTTCQSVVRVDVQNTQTLVFRNNLVRDNVGGLLVRADSRGSATSLR 364
+ N + L+GN +T V++++ NT +FR N + N GGL + A S L
Sbjct: 2402 SSSFAFNGIHLFGNISTSSQAVQLNLHNTVFFLFRANSIAHNRGGLYISATSSSPVVRLG 2461
Query: 365 GWIHNNLFFRNHDLPCLKVEGRQSSPYQEVTIYRNYFTRNRVPFDDVIVLRQVVSNFTYN 544
I N LF N + L + G YQ +T+ N + N + D IV V N T N
Sbjct: 2462 ALIKNCLFAYNSNSTALALSGNN---YQVITLLNNIISHNFALYHDTIVAHDVAINMTRN 2518
Query: 545 YVHDNTGLRILEVSGFDKVRLPIYQTTSHNGFYKNYATDREGRATIVAGTAGQSYVDNIF 724
+ NTGL L++ K+ + T +N FY N A G+ + + +N F
Sbjct: 2519 TLFSNTGLHTLDIHANSKLSVD-KNTFFYNNFYDNLALG-HGQQYLEMYGYQPAKENNEF 2576
Query: 725 FN-PDNDY--EMITVNRSISLXLWRTRID 802
FN P D + + +S W T +D
Sbjct: 2577 FNRPRRDLVKRQVLTQQGVSFDWW-THVD 2604
Score = 48.8 bits (111), Expect = 5e-06
Identities = 62/260 (23%), Positives = 100/260 (38%), Gaps = 6/260 (2%)
Frame = +2
Query: 86 VQHNISNSEFIKNRDGAIT------YQSVGEVNPLVAITRNEIIGNCLKLYGNFTTCQSV 247
VQ N+ N+ F R +I Y S +P+V + +I NCL Y + +T
Sbjct: 2423 VQLNLHNTVFFLFRANSIAHNRGGLYISATSSSPVVRL--GALIKNCLFAYNSNSTA--- 2477
Query: 248 VRVDVQNTQTLVFRNNLVRDNVGGLLVRADSRGSATSLRGWIHNNLFFRNHDLPCLKVEG 427
+ + N Q + NN++ N + A ++ N F N L L +
Sbjct: 2478 LALSGNNYQVITLLNNIISHNFALYHDTIVAHDVAINMT----RNTLFSNTGLHTLDIHA 2533
Query: 428 RQSSPYQEVTIYRNYFTRNRVPFDDVIVLRQVVSNFTYNYVHDNTGLRILEVSGFDKVRL 607
+ T + N F N +Q + + Y +N K ++
Sbjct: 2534 NSKLSVDKNTFFYNNFYDNLALGHG----QQYLEMYGYQPAKENNEFFNRPRRDLVKRQV 2589
Query: 608 PIYQTTSHNGFYKNYATDREGRATIVAGTAGQSYVDNIFFNPDNDYEMITVNRSISLXLW 787
Q S + + R+TI+AG++ + + N F +P NDYE+ T +S
Sbjct: 2590 LTQQGVSFDWWTHVDNETTRYRSTIIAGSSQEVFKFNTFNDPLNDYELTTGRQS---PYE 2646
Query: 788 RTRIDAXHNYWSYNVTLAVA 847
IDA NYW Y T+ VA
Sbjct: 2647 MGSIDAKENYWGYPGTVGVA 2666
>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
F18C12.1 protein.
Length = 4171
Score = 29.9 bits (64), Expect = 2.4
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 1/88 (1%)
Frame = +2
Query: 506 IVLRQVVSNFTYNYVHDNTGLRILEVSGFDKVRLPIYQTTSHNGFYKN-YATDREGRATI 682
IVLRQV S F Y Y + +++ DK L + Q + G N Y G+
Sbjct: 1588 IVLRQVSSEFEYTYEYQGNYAKLVHTPLTDKCYLTLTQ-AMYMGLGGNPYGPAGTGKTES 1646
Query: 683 VAGTAGQSYVDNIFFNPDNDYEMITVNR 766
V A + FN D ++ ++ R
Sbjct: 1647 VKALAALMGRQVLVFNCDEGIDVTSMGR 1674
>Z35601-2|CAA84666.1| 259|Caenorhabditis elegans Hypothetical
protein R10E9.2 protein.
Length = 259
Score = 29.9 bits (64), Expect = 2.4
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = -1
Query: 366 PRRDVAEPLESALTSNPPTLSRTKLFLNTSVCVFCTSTLTTDWQVVKFPYSLRQFPMISF 187
P + P E ++S + RT +F NT+ F +T+ + + FP ++ +FP S
Sbjct: 2 PCQSKKNPSEVHISSGRDLVQRTFVFSNTTGKDFLLKLITSS-EAISFPTNIFRFPPSSH 60
Query: 186 LVIATR 169
VI R
Sbjct: 61 RVIQFR 66
>AC024843-8|AAM48560.1| 726|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3c protein.
Length = 726
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 100 IEQRIHKEQRRRDHVSICRRSESSGRDH*ERDHRK 204
I R ++ RRRD R S S RD ++DHRK
Sbjct: 123 ISARSVRDDRRRDKPRQRRSSRSRSRDRGDKDHRK 157
>AC024843-7|AAF60843.2| 743|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3a protein.
Length = 743
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 100 IEQRIHKEQRRRDHVSICRRSESSGRDH*ERDHRK 204
I R ++ RRRD R S S RD ++DHRK
Sbjct: 123 ISARSVRDDRRRDKPRQRRSSRSRSRDRGDKDHRK 157
>AC024843-6|AAF60844.3| 525|Caenorhabditis elegans Hypothetical
protein Y61A9LA.3b protein.
Length = 525
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/35 (42%), Positives = 19/35 (54%)
Frame = +1
Query: 100 IEQRIHKEQRRRDHVSICRRSESSGRDH*ERDHRK 204
I R ++ RRRD R S S RD ++DHRK
Sbjct: 125 ISARSVRDDRRRDKPRQRRSSRSRSRDRGDKDHRK 159
>U13875-11|AAA21158.1| 1193|Caenorhabditis elegans Rna polymerase ii
(b) subunit protein2 protein.
Length = 1193
Score = 29.5 bits (63), Expect = 3.2
Identities = 25/98 (25%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Frame = -1
Query: 444 YGED*RPSTLRHGKSWFLKKRLL*IQPRRDVAEPLESALTSNPPTLSRTKLFLNTSVCVF 265
+GE R + HG + FL++RL +V++P + +N + L N+ C
Sbjct: 1092 FGEMERDCQISHGATQFLRERLF------EVSDPYHVYVCNNCGLIVVANLRTNSFECKA 1145
Query: 264 CTSTLTTDWQVVKFPYSLR-QFPMISFLVIATRGFTSP 154
C + T V+ PY+ + F + + IA R P
Sbjct: 1146 CRN--KTQVSAVRIPYACKLLFQELMSMSIAPRLMVKP 1181
>AC024807-3|AAK84614.1| 252|Caenorhabditis elegans Hypothetical
protein Y53G8AL.3 protein.
Length = 252
Score = 29.5 bits (63), Expect = 3.2
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -3
Query: 124 VLYEFAVRYVMLDVAIESYCGY--R*CYDFSYESVNS 20
V ++ R V+LD A+++ C C DF YE VNS
Sbjct: 189 VQFDGTSRAVLLDAALQNSCSTDTSDCLDFKYEDVNS 225
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical protein
F29D11.1 protein.
Length = 4753
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 296 LVRDNVGGLLVRADSRGSATSLRGWIHNNLFFRNHDLPCLKVE-GRQSSPYQEVTIYRNY 472
++RD++G L +++ + WI+ N++F NHD +E + Y+++ +
Sbjct: 2195 VIRDSIGSLTIKSLAID-------WINYNMYFINHDAERTNIEVSKLDGTYRKILLTTKT 2247
Query: 473 FTRNRVPFDDV 505
T + + D V
Sbjct: 2248 ETPSSIAVDPV 2258
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-related
protein protein.
Length = 4753
Score = 28.3 bits (60), Expect = 7.3
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Frame = +2
Query: 296 LVRDNVGGLLVRADSRGSATSLRGWIHNNLFFRNHDLPCLKVE-GRQSSPYQEVTIYRNY 472
++RD++G L +++ + WI+ N++F NHD +E + Y+++ +
Sbjct: 2195 VIRDSIGSLTIKSLAID-------WINYNMYFINHDAERTNIEVSKLDGTYRKILLTTKT 2247
Query: 473 FTRNRVPFDDV 505
T + + D V
Sbjct: 2248 ETPSSIAVDPV 2258
>Z99169-1|CAB16306.2| 966|Caenorhabditis elegans Hypothetical
protein C26H9A.1 protein.
Length = 966
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 348 EPLESALTSN--PPTLSRTKLFLNTSVCVFCTSTLTTDWQVVKFPYSLRQFPMI 193
EP+ + L +N PPT RT F N + + ++ +V PY++ FP +
Sbjct: 417 EPILNELWTNAPPPTFHRTNKFTNVFQSIVDSYGVSQYCEVNPAPYTIITFPFL 470
>Z81533-9|CAB04341.1| 307|Caenorhabditis elegans Hypothetical
protein F36G9.14 protein.
Length = 307
Score = 27.9 bits (59), Expect = 9.6
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +2
Query: 158 EVNPLVAITRNEIIGNCLKLYGNFTTCQSVVRVDVQNTQTLVFRNN 295
+V+P+ +T ++ L + +R+D++NT T ++ NN
Sbjct: 16 KVDPIERLTIRKVSRKLRILIDQISDLFETIRIDIENTLTTIYLNN 61
>AC024791-26|AAK29889.1| 421|Caenorhabditis elegans Hypothetical
protein Y47G6A.27 protein.
Length = 421
Score = 27.9 bits (59), Expect = 9.6
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 249 LEWTYRIRKRWCLGIIW 299
+ WTYR+RK+ +G+ W
Sbjct: 42 VSWTYRLRKKMKIGLCW 58
>AB055112-1|BAB62293.1| 966|Caenorhabditis elegans VHA-7 protein.
Length = 966
Score = 27.9 bits (59), Expect = 9.6
Identities = 16/54 (29%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
Frame = -1
Query: 348 EPLESALTSN--PPTLSRTKLFLNTSVCVFCTSTLTTDWQVVKFPYSLRQFPMI 193
EP+ + L +N PPT RT F N + + ++ +V PY++ FP +
Sbjct: 417 EPILNELWTNAPPPTFHRTNKFTNVFQSIVDSYGVSQYCEVNPAPYTIITFPFL 470
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,707,828
Number of Sequences: 27780
Number of extensions: 358693
Number of successful extensions: 1006
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 956
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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