Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L18
         (778 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    29   3.1  
12_01_0630 - 5203802-5204111,5204896-5204900                           29   4.1  
05_07_0310 + 29135875-29136052,29136206-29136617,29136723-291368...    28   7.2  

>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +2

Query: 671 REFDRRSGSDKTGVKSVDKREGAGPHXWGTI 763
           R ++RRSG   TG     KREGAG   WGT+
Sbjct: 158 RAYERRSG---TGRGYGMKREGAGRGNWGTV 185


>12_01_0630 - 5203802-5204111,5204896-5204900
          Length = 104

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = -3

Query: 746 GDLRPPSCRLISHRFCQSR 690
           G LRPPSCR IS R+   R
Sbjct: 12  GTLRPPSCRAISRRYRSPR 30


>05_07_0310 +
           29135875-29136052,29136206-29136617,29136723-29136867,
           29137944-29138102,29138183-29138242,29138349-29138546
          Length = 383

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = +2

Query: 662 RGKREFDRRSGSDKTGVKSVDKREGAGPHXWGTI 763
           R +R ++R SG   TG     KREG+G   WGT+
Sbjct: 160 RPRRAYERHSG---TGRGYELKREGSGRGNWGTV 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,568,654
Number of Sequences: 37544
Number of extensions: 333533
Number of successful extensions: 917
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 894
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 917
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)