Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L18
         (778 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophi...    46   2e-05
AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical ...    30   2.1  
AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical...    28   6.5  

>AF016672-7|AAB66119.1|  378|Caenorhabditis elegans Vig (drosophila
           vasa intronic gene)ortholog protein 1, isoform a
           protein.
          Length = 378

 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 18/29 (62%), Positives = 24/29 (82%)
 Frame = +2

Query: 671 REFDRRSGSDKTGVKSVDKREGAGPHXWG 757
           R+FDR+SGSD+TGV+S DK++G G   WG
Sbjct: 178 RQFDRQSGSDRTGVRSFDKKDGHGKGNWG 206


>AL132862-2|CAB70224.1| 1019|Caenorhabditis elegans Hypothetical
            protein Y73F8A.5 protein.
          Length = 1019

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +3

Query: 447  RVVVKTGRRTVPQKTRKELRGHRDASSA 530
            RV+   GRR+ P  +R  LR HR+  +A
Sbjct: 983  RVIFSKGRRSAPNNSRTTLRDHRENDNA 1010


>AF003139-10|AAB54160.3|  294|Caenorhabditis elegans Hypothetical
           protein F53G12.4 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 759 VPQXWGPAPSLLSTDFTPVLSEP-DLRSNSRLPLLS 655
           +P  WGP+ S L TD     S+P     N+ LP LS
Sbjct: 168 IPNAWGPSKSALVTDDVASTSDPLPAIFNAHLPPLS 203


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,003,440
Number of Sequences: 27780
Number of extensions: 263106
Number of successful extensions: 699
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 679
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)