Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L18
         (778 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    24   1.4  
AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding pr...    22   5.5  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   7.3  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 317 VTVPTRKGIKETQNVKSQDIKSG 385
           VTVP  KG+  + NV S+ I +G
Sbjct: 82  VTVPRYKGVPSSLNVISEKIGNG 104


>AB083010-1|BAC54131.1|  132|Apis mellifera fatty acid binding
           protein protein.
          Length = 132

 Score = 22.2 bits (45), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +3

Query: 579 RTVQSVAVHQDHRVSLVRDRAGRVLLTIEANVSSTEDPALTK 704
           R V+SV     ++  L++ + G    TIE   SSTE  A+ K
Sbjct: 79  RKVKSVCTLDGNK--LIQVQKGEKQTTIEREFSSTEMKAIMK 118


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -1

Query: 196 VQEKSVSVHYSHTVGILHCD 137
           +Q+   SVH+ H  G++H D
Sbjct: 15  IQQILESVHHCHHNGVVHRD 34


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 10/23 (43%), Positives = 12/23 (52%)
 Frame = -3

Query: 728 SCRLISHRFCQSRIFGRTHVCLY 660
           S  +I+   C S I GRTH   Y
Sbjct: 136 SAVVITAAICTSGIVGRTHTVGY 158


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,318
Number of Sequences: 438
Number of extensions: 3368
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24396777
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)