Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L17
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.03 |rpc10|rpb12|DNA-directed RNA polymerase I, II and I...    66   2e-12
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   3.5  

>SPBC19C2.03 |rpc10|rpb12|DNA-directed RNA polymerase I, II and III
           subunit Rpc10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 63

 Score = 66.5 bits (155), Expect = 2e-12
 Identities = 26/44 (59%), Positives = 35/44 (79%)
 Frame = +3

Query: 177 MIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           MIY+C +C   N I+ ++ IRCRECG+R+MYK RTKR+V F+AR
Sbjct: 20  MIYLCADCGARNTIQAKEVIRCRECGHRVMYKMRTKRMVQFEAR 63


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 268 TRKEQKDWLCLTLG 309
           ++KE++DW CL LG
Sbjct: 153 SKKERRDWTCLDLG 166


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,569,387
Number of Sequences: 5004
Number of extensions: 28358
Number of successful extensions: 68
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)