Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L17
         (489 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47727-1|CAA87656.1|   58|Homo sapiens RNA polymerase II protein.     101   1e-21
CR456870-1|CAG33151.1|   58|Homo sapiens POLR2K protein.              101   1e-21
BC018157-1|AAH18157.1|   58|Homo sapiens polymerase (RNA) II (DN...   101   1e-21
BC000806-1|AAH00806.1|   58|Homo sapiens polymerase (RNA) II (DN...   101   1e-21
AJ252078-1|CAB91873.1|   58|Homo sapiens RPB10alpha protein.          101   1e-21
AL158196-5|CAI17021.1|   58|Homo sapiens protein ( Human DNA seq...    77   3e-14

>Z47727-1|CAA87656.1|   58|Homo sapiens RNA polymerase II protein.
          Length = 58

 Score =  101 bits (243), Expect = 1e-21
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +3

Query: 138 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           DT    Q   + PMIY+CGECH ENEIK RDPIRCRECGYRIMYKKRTKRLVVFDAR
Sbjct: 2   DTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>CR456870-1|CAG33151.1|   58|Homo sapiens POLR2K protein.
          Length = 58

 Score =  101 bits (243), Expect = 1e-21
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +3

Query: 138 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           DT    Q   + PMIY+CGECH ENEIK RDPIRCRECGYRIMYKKRTKRLVVFDAR
Sbjct: 2   DTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>BC018157-1|AAH18157.1|   58|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide K, 7.0kDa protein.
          Length = 58

 Score =  101 bits (243), Expect = 1e-21
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +3

Query: 138 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           DT    Q   + PMIY+CGECH ENEIK RDPIRCRECGYRIMYKKRTKRLVVFDAR
Sbjct: 2   DTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>BC000806-1|AAH00806.1|   58|Homo sapiens polymerase (RNA) II (DNA
           directed) polypeptide K, 7.0kDa protein.
          Length = 58

 Score =  101 bits (243), Expect = 1e-21
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +3

Query: 138 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           DT    Q   + PMIY+CGECH ENEIK RDPIRCRECGYRIMYKKRTKRLVVFDAR
Sbjct: 2   DTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>AJ252078-1|CAB91873.1|   58|Homo sapiens RPB10alpha protein.
          Length = 58

 Score =  101 bits (243), Expect = 1e-21
 Identities = 45/57 (78%), Positives = 47/57 (82%)
 Frame = +3

Query: 138 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           DT    Q   + PMIY+CGECH ENEIK RDPIRCRECGYRIMYKKRTKRLVVFDAR
Sbjct: 2   DTQKDVQPPKQQPMIYICGECHTENEIKSRDPIRCRECGYRIMYKKRTKRLVVFDAR 58


>AL158196-5|CAI17021.1|   58|Homo sapiens protein ( Human DNA
           sequence from clone RP11-90M2 on chromosome 13 Contains 
           gene FLJ10956, the gene for HSPC126 protein (DRIP36), a
           novel gene  ).
          Length = 58

 Score = 77.0 bits (181), Expect = 3e-14
 Identities = 33/57 (57%), Positives = 42/57 (73%)
 Frame = +3

Query: 138 DTTGKEQSVTKVPMIYVCGECHKENEIKPRDPIRCRECGYRIMYKKRTKRLVVFDAR 308
           DT    Q+  + PM Y C ECH EN++K RDP++C ECGYRI+YKKRT+ LV FDA+
Sbjct: 2   DTQKDIQTPKQQPMAYNCRECHTENDMKSRDPVKCGECGYRIIYKKRTEILVGFDAQ 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 52,543,263
Number of Sequences: 237096
Number of extensions: 972274
Number of successful extensions: 1864
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1742
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1858
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)