Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L15
         (824 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0146 - 7171656-7172044,7172383-7175008                           30   2.6  
09_06_0291 - 22066550-22067610,22067721-22067975,22068093-220682...    28   7.8  

>02_02_0146 - 7171656-7172044,7172383-7175008
          Length = 1004

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +2

Query: 521 KLY-LIPLNEQFLYIYNLNLGNCSNDFHKI*YTGDFGGDKSI*LRFIFRKCCFIRVFNN 694
           KLY L+  N  F  ++ +NLG+C    + + Y   F GD    + + F K   I ++NN
Sbjct: 384 KLYDLVVFNNSFSGVFPMNLGDCDTINNIMAYNNHFVGDFPENI-WSFAKLINIMIYNN 441


>09_06_0291 -
           22066550-22067610,22067721-22067975,22068093-22068207,
           22068329-22068381,22068467-22068724,22069110-22069160,
           22069577-22069822,22070427-22070652,22070984-22071100
          Length = 793

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 585 APMIFIKFSIQGISGAINRSSYD 653
           AP++F+ F + GI GA+N   YD
Sbjct: 243 APIVFVWFILIGILGAVNICKYD 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,871,414
Number of Sequences: 37544
Number of extensions: 392692
Number of successful extensions: 940
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)