Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L14
         (804 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1571 + 27811510-27811613,27812493-27812563,27812798-278128...    82   4e-16
12_02_0449 - 19167167-19167300,19167394-19167550,19168527-191685...    28   7.6  
05_01_0040 - 273384-273437,273920-274102,274465-274677,275479-27...    28   10.0 
02_01_0071 - 496936-497158,497231-497352,497918-497966,498141-49...    28   10.0 
02_01_0057 + 420812-421556,422473-422597,422622-422912,423357-42...    28   10.0 

>07_03_1571 +
           27811510-27811613,27812493-27812563,27812798-27812889,
           27812963-27813022,27813130-27813351,27813450-27813526,
           27813618-27813687,27813793-27813906,27813985-27814051,
           27814259-27814363,27814470-27814594
          Length = 368

 Score = 82.2 bits (194), Expect = 4e-16
 Identities = 40/128 (31%), Positives = 76/128 (59%), Gaps = 2/128 (1%)
 Frame = +1

Query: 79  MDLNFFCKXLPKXALHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRN 258
           M +  +C  LPK  LHAHLNGS+  +T+L+L +   D G       F D   +   + R+
Sbjct: 7   MSMREWCVALPKVELHAHLNGSVRDSTLLELAKQLGDKG----DIVFEDVKDVIMKNGRS 62

Query: 259 LSECFQVFNIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPRDTQY--ITKKQYI 432
           L ECF++F + H LT+  + +   T+  +++F  +   Y+E+R+TP++ +   +TK+ Y+
Sbjct: 63  LPECFRLFELYHILTTDHDTVTRITKEVVEDFAMENVVYLEIRTTPKNNEAKGMTKRSYM 122

Query: 433 DSIIRAME 456
           +++I+ ++
Sbjct: 123 NAVIKGLK 130



 Score = 78.6 bits (185), Expect = 5e-15
 Identities = 30/63 (47%), Positives = 47/63 (74%)
 Frame = +1

Query: 583 VVGIELSGNPAVGNFGDFIPALNRARQSGLKVTLHCGEVCNPEEVLEMLNFKPERIGHGV 762
           V+GI+LSGNP VG +  ++PAL  A++ G+ +T+HCGEV N  E+  +L+F P+R+GH  
Sbjct: 195 VIGIDLSGNPVVGEWETYLPALEHAKELGIPITIHCGEVANRNEIRAVLDFCPQRLGHVC 254

Query: 763 CIH 771
           C++
Sbjct: 255 CLN 257


>12_02_0449 -
           19167167-19167300,19167394-19167550,19168527-19168539,
           19170218-19170540
          Length = 208

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -1

Query: 438 TINILLLCYVLCVTWSTSQLNITTPIFLKLLECQ 337
           TI ++LLC+ L V  +     I +P+   +L CQ
Sbjct: 75  TIKVILLCFALLVAGAPDSPPIPSPVSSAMLFCQ 108


>05_01_0040 -
           273384-273437,273920-274102,274465-274677,275479-276294,
           276431-276823,277233-277238
          Length = 554

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 625 FGDFIPALNRARQSGLKVTLHCGEVCNPEEVLEMLNFK 738
           +GD IP+L+       K+ LH G+ C+  E   + N++
Sbjct: 203 YGDKIPSLSHHWHYRDKIPLHSGQWCHDAEARPLSNYQ 240


>02_01_0071 -
           496936-497158,497231-497352,497918-497966,498141-498211,
           498368-498454,498660-498740,498838-498901,498994-499057,
           499246-499444,499916-500134
          Length = 392

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 704 LHTSPQCSVTLSPDCLALFKAGIKSPKFPTAGLPLNSIPTTVSG 573
           L  +   SVTL PD L+       SP FP+  + LN    ++SG
Sbjct: 36  LPVNDSISVTLDPDHLSATTTVAVSPSFPSDRMWLNGKEISLSG 79


>02_01_0057 +
           420812-421556,422473-422597,422622-422912,423357-423555,
           423737-423800,423894-423957,424055-424135,424334-424420,
           424492-424500
          Length = 554

 Score = 27.9 bits (59), Expect = 10.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 704 LHTSPQCSVTLSPDCLALFKAGIKSPKFPTAGLPLNSIPTTVSG 573
           L  +   SVTL PD L+       SP FP+  + LN    ++SG
Sbjct: 350 LPVNDSISVTLDPDHLSATTTVAVSPSFPSDRMWLNGKEISLSG 393


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,026,574
Number of Sequences: 37544
Number of extensions: 385470
Number of successful extensions: 857
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 827
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2185924824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)