Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L14
         (804 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical p...   105   4e-23
U61947-4|AAO44914.1|  349|Caenorhabditis elegans Hypothetical pr...    49   5e-06
U61947-3|AAB03130.2|  391|Caenorhabditis elegans Hypothetical pr...    49   5e-06
Z78411-1|CAB01644.2|  175|Caenorhabditis elegans Hypothetical pr...    29   2.9  
U97189-9|AAC48161.1|  263|Caenorhabditis elegans Hypothetical pr...    29   5.1  

>U28928-10|AAN63432.2|  388|Caenorhabditis elegans Hypothetical
           protein C44B7.12 protein.
          Length = 388

 Score =  105 bits (252), Expect = 4e-23
 Identities = 67/226 (29%), Positives = 109/226 (48%), Gaps = 2/226 (0%)
 Frame = +1

Query: 100 KXLPKXALHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSECFQV 279
           K +PK  LHAHL+GSLS  T+  +         SD+T       +       N++  F  
Sbjct: 57  KNMPKVELHAHLSGSLSPETIKLIME-------SDETRAEEIMKKYKLEKPENMTGVFDC 109

Query: 280 FNIAHSLTSTSEALVMATELTLQEFQEDGCCYIELRSTPRDTQYITKKQYIDSIIRAME- 456
           F + H++    EA+ +A   T++EF+ED C Y+ELR++P++T ++T + Y+   I + E 
Sbjct: 110 FPVIHAILRKPEAIRIAIRQTIKEFEEDNCVYLELRTSPKETDFMTYEDYLQVCIESFEA 169

Query: 457 KPXXXXXXXXXXXXXXXRASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPAVGNFGDF 636
                            R    +    I  +  E  +   + +VG+ELSG+P +      
Sbjct: 170 AKHEFPRIKTFLIVSLDRRMPFETAAHILGLIGEAQQ-RTNVIVGVELSGDPHLDGRRLL 228

Query: 637 IPALNRARQSGLKVTLHCGEVC-NPEEVLEMLNFKPERIGHGVCIH 771
              +   R  GL +T+H  EV  N  +V + LN +P+RIGHG  +H
Sbjct: 229 KLFVAARRFHGLGITIHLAEVLQNMADVEDYLNLRPDRIGHGTFLH 274


>U61947-4|AAO44914.1|  349|Caenorhabditis elegans Hypothetical
           protein C06G3.5b protein.
          Length = 349

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 11/228 (4%)
 Frame = +1

Query: 109 PKXALHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSECFQVFNI 288
           PK  LH HL+G++   T++ L +         KT   L +  +   +  NLS+  + F I
Sbjct: 8   PKVELHLHLDGAVRFDTLIDLSQQKGIPLAGAKTVEELKKVLV-THEPANLSKVLEAFEI 66

Query: 289 AHSLTSTSEALVMATELTLQEFQED-GCCYIELRSTPR-----DTQYITKKQYIDSIIRA 450
              +     A +      L E Q + G  Y E R +P      D   +T    + ++ + 
Sbjct: 67  FLPVIRGDLAAIERVAYELCEDQHNNGVVYFEGRYSPHLLLCNDYPEVTAAHVVAAVKKG 126

Query: 451 MEKPXXXXXXXXXXXXXXXRASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPAVGNFG 630
            ++                R    +  + I D+A +  ++    VV I+++G+ A G   
Sbjct: 127 FDRGEKQFGIKARSILCCIRGLDKKFPQLILDLATDLKQLG---VVAIDVAGS-AHGADE 182

Query: 631 DFIP----ALNRARQSGLKVTLHCGEVCNPEEVLEML-NFKPERIGHG 759
            + P    A   A + G+  T+H GE   P+EV++ + +   ERIGHG
Sbjct: 183 QYEPEVVAAFQEAHKRGIHRTVHAGESGGPKEVIKAIEDMYAERIGHG 230


>U61947-3|AAB03130.2|  391|Caenorhabditis elegans Hypothetical
           protein C06G3.5a protein.
          Length = 391

 Score = 48.8 bits (111), Expect = 5e-06
 Identities = 55/228 (24%), Positives = 96/228 (42%), Gaps = 11/228 (4%)
 Frame = +1

Query: 109 PKXALHAHLNGSLSQATMLQLQRYYVDAGISDKTNTFLDEFQIGAGDTRNLSECFQVFNI 288
           PK  LH HL+G++   T++ L +         KT   L +  +   +  NLS+  + F I
Sbjct: 50  PKVELHLHLDGAVRFDTLIDLSQQKGIPLAGAKTVEELKKVLV-THEPANLSKVLEAFEI 108

Query: 289 AHSLTSTSEALVMATELTLQEFQED-GCCYIELRSTPR-----DTQYITKKQYIDSIIRA 450
              +     A +      L E Q + G  Y E R +P      D   +T    + ++ + 
Sbjct: 109 FLPVIRGDLAAIERVAYELCEDQHNNGVVYFEGRYSPHLLLCNDYPEVTAAHVVAAVKKG 168

Query: 451 MEKPXXXXXXXXXXXXXXXRASQLQEVEEIADIAIERHKIHPDTVVGIELSGNPAVGNFG 630
            ++                R    +  + I D+A +  ++    VV I+++G+ A G   
Sbjct: 169 FDRGEKQFGIKARSILCCIRGLDKKFPQLILDLATDLKQLG---VVAIDVAGS-AHGADE 224

Query: 631 DFIP----ALNRARQSGLKVTLHCGEVCNPEEVLEML-NFKPERIGHG 759
            + P    A   A + G+  T+H GE   P+EV++ + +   ERIGHG
Sbjct: 225 QYEPEVVAAFQEAHKRGIHRTVHAGESGGPKEVIKAIEDMYAERIGHG 272


>Z78411-1|CAB01644.2|  175|Caenorhabditis elegans Hypothetical
           protein F02D8.1 protein.
          Length = 175

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +1

Query: 19  DHLLSFFEKWKASFNXVFLVMDLNF 93
           D+  S FEKWK+SFN   L  D  F
Sbjct: 37  DYRKSAFEKWKSSFNLNLLANDQQF 61


>U97189-9|AAC48161.1|  263|Caenorhabditis elegans Hypothetical
           protein C48B6.9 protein.
          Length = 263

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -2

Query: 488 LDMIERFIDGFSIALIILSIYCFFV 414
           +D+I   I  F +A++ILSI  FFV
Sbjct: 125 IDVIRDVIASFDVAIVILSILAFFV 149


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,979
Number of Sequences: 27780
Number of extensions: 368761
Number of successful extensions: 826
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1966828226
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)