Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L12
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              27   0.23 
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    22   4.9  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   6.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   6.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   8.5  

>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 26.6 bits (56), Expect = 0.23
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 149 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 259
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 26.6 bits (56), Expect = 0.23
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = +2

Query: 377 SDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL 487
           +DT+   K KI  K  I PD + L+   KQ E G TL
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ-ETGVTL 767



 Score = 24.6 bits (51), Expect = 0.91
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 605 SDTIXNVKAKIQDKEGIPPDQXRLIFAGKQ 694
           +DT+   K KI  K  I PD   L+   KQ
Sbjct: 732 TDTVLAYKPKILGKPTISPDSRHLVTLDKQ 761


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = -1

Query: 475 IFKLFARKDQPLLIRRNSLFVL 410
           +  +F+R+D   +IRRNS + L
Sbjct: 104 MISVFSRQDIETIIRRNSRYPL 125


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = +1

Query: 274 SKRIYSPFGITSERWNADLCENTY 345
           S R   P+G  +  WN   C N Y
Sbjct: 91  SMRSELPWGSCNNYWNTKNCVNPY 114


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = +1

Query: 1   DSWKSYLACTTCPTICDN 54
           DS+KS L C  C T   N
Sbjct: 142 DSYKSNLKCDKCSTYQSN 159


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 663 SGGIPSLS*ILAFTXSMVSDASTSSV 586
           +GG+PS S  L  + +M  DA  +++
Sbjct: 592 TGGVPSKSPTLTHSPTMYGDALNANL 617


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,735
Number of Sequences: 438
Number of extensions: 3844
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)