Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L11
         (890 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase Dld1|Schi...    29   0.67 
SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces pom...    28   1.6  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    27   2.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    27   4.7  
SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   4.7  
SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   6.3  
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos...    26   6.3  
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce...    26   6.3  
SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr 2...    26   8.3  

>SPAC1002.09c |dld1|dldh|dihydrolipoamide dehydrogenase
           Dld1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +1

Query: 175 SSFEIGEPLYPAHANVPADSSYDFIIVGGGSAGCVLANR 291
           +  EI + LY A A+   +  YD  ++GGG  G V A R
Sbjct: 27  AQIEISKRLYSAKAS--GNGEYDLCVIGGGPGGYVAAIR 63


>SPBC17A3.07 |pgr1||glutathione reductase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 464

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +1

Query: 223 PADSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEA 333
           P    +D++++GGGS G   A R  +     V +IEA
Sbjct: 3   PISKVFDYLVIGGGSGGLASARRAAK-HGAKVALIEA 38


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +1

Query: 229 DSSYDFIIVGGGSAGCVLANRLTEVANWSVLMIEAGD 339
           D  YD I++G G   CVL+  L  V    VL I+  D
Sbjct: 2   DEEYDVIVLGTGLTECVLSG-LLSVDGKKVLHIDRND 37


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
 Frame = +1

Query: 520 VRGNRADYDNWAENGNEGWD----WNTVIQYFKKSERLD 624
           V GN AD  +W  +G   WD    +  V+ + KK + LD
Sbjct: 110 VEGNAADPFSWIPDGKNVWDSPPKYIRVLSHNKKEKSLD 148


>SPCC757.11c |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 471

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 349 SIANSPGYSLITSTLLPNWGYFG 417
           SIANSP  SL+T  L P +   G
Sbjct: 390 SIANSPSVSLLTKVLHPKYHLIG 412


>SPAC1565.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 647 NPQTYTATKDTSESRDRCGSLSTKVFLTLSKNKVTKCYSTRMD 775
           NP+      DT+ S  + GS S    +T S + V   YS  +D
Sbjct: 199 NPKEIEMNSDTTSSVPKSGSTSFSANVTSSTSMVYLLYSVHVD 241


>SPAC20G8.05c |cdc15||cell division control protein
           Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 927

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 19/70 (27%), Positives = 32/70 (45%)
 Frame = +2

Query: 575 GTGIRSFSTLRKVKDSMTIIS*AVNPQTYTATKDTSESRDRCGSLSTKVFLTLSKNKVTK 754
           G   RS S L+  K + +  S   N   Y+ ++ +SE   R GS+S +    +S+   ++
Sbjct: 779 GPNRRSSSVLQSQKSTSSNTSNR-NNGGYSGSRPSSEMGHRYGSMSGRSMRQVSQRSTSR 837

Query: 755 CYSTRMDNNN 784
             S    N N
Sbjct: 838 ARSPEPTNRN 847


>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 335

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 610 SERLDD--NHIMSSESADLHGNKGYLGVTRPLWKSFDEGLFDAFK 738
           S +L D  N ++ +E+ +L G       +R ++KS  +GL DAF+
Sbjct: 152 SPKLTDLQNQLVRTEAENLVGEMQLDNTSREVFKSSFQGLMDAFQ 196


>SPBC24C6.09c |||phosphoketolase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 825

 Score = 25.8 bits (54), Expect = 8.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +1

Query: 289 RLTEVANWSVLMIEAGDDPPSIANSPGYSLITSTL 393
           +L E+ N+   ++E  DDPP I  +P +   TSTL
Sbjct: 794 KLEEIENY---IMENKDDPPEIYAAPVFKNKTSTL 825


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,212,090
Number of Sequences: 5004
Number of extensions: 62511
Number of successful extensions: 206
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)