Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L10
         (539 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein p...    26   0.70 
AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein p...    26   0.70 
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    23   8.7  

>AB090815-1|BAC57905.1|  492|Anopheles gambiae gag-like protein
           protein.
          Length = 492

 Score = 26.2 bits (55), Expect = 0.70
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 172 LNEIGSWFGRRSKTP 216
           L +IG++FGR SKTP
Sbjct: 16  LKDIGAFFGRSSKTP 30


>AB090814-1|BAC57903.1|  499|Anopheles gambiae gag-like protein
           protein.
          Length = 499

 Score = 26.2 bits (55), Expect = 0.70
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 172 LNEIGSWFGRRSKTP 216
           L +IG++FGR SKTP
Sbjct: 47  LKDIGAFFGRSSKTP 61


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1173

 Score = 22.6 bits (46), Expect = 8.7
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 225 HGRRSLAAATEPRTDFVQLQLAEW 154
           H RR  AA  + R +  +  +AEW
Sbjct: 870 HSRRGTAAGAQLRKEERETTIAEW 893


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 519,680
Number of Sequences: 2352
Number of extensions: 11016
Number of successful extensions: 18
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 50320221
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)