Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L09
(586 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces... 94 2e-20
SPCC285.12 |lsm7||U6 snRNP-associated protein Lsm7|Schizosacchar... 56 3e-09
SPAC2F3.17c |lsm6||U6 snRNP-associated protein Lsm6|Schizosaccha... 49 6e-07
SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyc... 47 2e-06
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 44 2e-05
SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8 |Schizosacch... 44 2e-05
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 32 0.071
SPBC30D10.06 |lsm4||U6 snRNP-associated protein Lsm4|Schizosacch... 31 0.094
SPBC20F10.09 |lsm5||U6 snRNP-associated protein Lsm5|Schizosacch... 31 0.12
SPBC9B6.05c |lsm3||U6 snRNP-associated protein Lsm3|Schizosaccha... 27 1.5
SPCC1620.01c |lsm2||U6 snRNP-associated protein core protein|Sch... 27 1.5
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.0
SPCC4B3.12 |set9||histone lysine methyltransferase Set9|Schizosa... 27 2.7
SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9 |Schizos... 26 3.5
SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyc... 26 4.7
>SPBC4B4.05 |smg1||Sm snRNP core protein Smg1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 77
Score = 93.9 bits (223), Expect = 2e-20
Identities = 40/76 (52%), Positives = 61/76 (80%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKA P LKK++D+++ ++LN R V GVLRG+D F+N+VL++S+EE DG++ +G V
Sbjct: 1 MSKAGAPDLKKYLDRQVFVQLNGSRKVYGVLRGYDIFLNIVLEDSIEEKVDGEKVKIGSV 60
Query: 292 VIRGNSIIMLESLDRL 339
IRGNS+IM+E+LD++
Sbjct: 61 AIRGNSVIMIETLDKM 76
>SPCC285.12 |lsm7||U6 snRNP-associated protein
Lsm7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 113
Score = 56.4 bits (130), Expect = 3e-09
Identities = 24/73 (32%), Positives = 45/73 (61%), Gaps = 7/73 (9%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD-------GQRNNVGMVV 294
L ++ D+++ GR +TG+L+GFD MNLVLD+ E+ ++ G +G+VV
Sbjct: 28 LSRYQDQRIQATFTGGRQITGILKGFDQLMNLVLDDVEEQLRNPEDGKLTGAIRKLGLVV 87
Query: 295 IRGNSIIMLESLD 333
+RG +++++ +D
Sbjct: 88 VRGTTLVLIAPMD 100
>SPAC2F3.17c |lsm6||U6 snRNP-associated protein
Lsm6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 75
Score = 48.8 bits (111), Expect = 6e-07
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV-GMVVIRGNSI 312
L K + KK+ I+L++G G+L D +MNL L E EE +G++ NV G IRGN++
Sbjct: 9 LNKVIGKKVLIRLSSGVDYKGILSCLDGYMNLAL-ERTEEYVNGKKTNVYGDAFIRGNNV 67
Query: 313 IMLESLD 333
+ + +LD
Sbjct: 68 LYVSALD 74
>SPBC3D6.08c |||mRNA decapping complex subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 140
Score = 47.2 bits (107), Expect = 2e-06
Identities = 22/69 (31%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC-KDGQRNNV--GMVVIRGN 306
L ++D+K+ + L G+ + G+LR FD F NL+L ++E D ++ G+ ++RG
Sbjct: 16 LVDYVDRKVIVVLRDGKKLIGILRSFDQFANLMLQYTIERIYVDDMYGDIDRGVYIVRGE 75
Query: 307 SIIMLESLD 333
++++L LD
Sbjct: 76 NVVLLGELD 84
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 44.0 bits (99), Expect = 2e-05
Identities = 15/45 (33%), Positives = 33/45 (73%)
Frame = +1
Query: 196 GVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLESL 330
G +RGFD FMN+VLD++V+ + +G ++++G++I +++++
Sbjct: 40 GQIRGFDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQAI 84
>SPCC1840.10 |lsm8||U6 snRNP-associated protein Lsm8
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 94
Score = 43.6 bits (98), Expect = 2e-05
Identities = 22/66 (33%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEEC----KDGQRNNVGMVVIRG 303
L FM++++ + N GR V G L+GFD NL+L +S E +D + +G+ ++RG
Sbjct: 3 LADFMEQRVQVITNDGRVVLGSLKGFDHTTNLILSDSFERIISMDQDMETIPLGVYLLRG 62
Query: 304 NSIIML 321
++ M+
Sbjct: 63 ENVAMV 68
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 31.9 bits (69), Expect = 0.071
Identities = 22/70 (31%), Positives = 35/70 (50%), Gaps = 12/70 (17%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNV------------GMV 291
++ L++ GR G L FD FMNLVL + +E + ++ NV G+V
Sbjct: 10 LNHSLNVTTKDGRTFVGQLLAFDGFMNLVLSD-CQEYRHIKKQNVPSNSVYEEKRMLGLV 68
Query: 292 VIRGNSIIML 321
++RG I+ L
Sbjct: 69 ILRGEFIVSL 78
>SPBC30D10.06 |lsm4||U6 snRNP-associated protein
Lsm4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 31.5 bits (68), Expect = 0.094
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +1
Query: 154 KKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQR-NNVGMVVIRGNSIIMLESL 330
+ + ++L G G L D +MNL L E + DG + + IRGN+I L
Sbjct: 13 RPILVELKNGETFNGHLENCDNYMNLTLREVIRTMPDGDKFFRLPECYIRGNNIKYLRIQ 72
Query: 331 DRL 339
D +
Sbjct: 73 DEV 75
>SPBC20F10.09 |lsm5||U6 snRNP-associated protein
Lsm5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 80
Score = 31.1 bits (67), Expect = 0.12
Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSI 312
+ K + L + + + R G L GFD ++N+VL + E + G +++ GN +
Sbjct: 11 IDKCIGSNLWVIMKSEREFAGTLVGFDDYVNIVLKDVTEYDTVTGVTEKHSEMLLNGNGM 70
Query: 313 IML 321
ML
Sbjct: 71 CML 73
>SPBC9B6.05c |lsm3||U6 snRNP-associated protein
Lsm3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 93
Score = 27.5 bits (58), Expect = 1.5
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 252
+D+ + +KL R + G L +D +N+VL ++ E
Sbjct: 18 LDEIVYVKLRGDRELNGRLHAYDEHLNMVLGDAEE 52
>SPCC1620.01c |lsm2||U6 snRNP-associated protein core
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 96
Score = 27.5 bits (58), Expect = 1.5
Identities = 9/34 (26%), Positives = 22/34 (64%)
Frame = +1
Query: 139 KKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLD 240
K +D +++++L ++ G+L+ D F+N+ L+
Sbjct: 8 KTLIDTEVTVELKNDMSIRGILKSVDQFLNVKLE 41
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -3
Query: 233 TKFMNGSKPRNTPVTARPAFSFIDNFLSMNF 141
T+ GSKP NT V A S ++ ++MNF
Sbjct: 919 TQLNTGSKPVNTNVEALTTISSMNQAVNMNF 949
>SPCC4B3.12 |set9||histone lysine methyltransferase
Set9|Schizosaccharomyces pombe|chr 3|||Manual
Length = 441
Score = 26.6 bits (56), Expect = 2.7
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Frame = +2
Query: 335 DFSRLRVGK-KYHQCCKCASRFINK*I*NS 421
D + R GK K +QC C+ FIN+ I NS
Sbjct: 351 DLWKKRHGKRKVYQCSNCSQTFINEDIQNS 380
>SPAC23H4.02 |ppk9||serine/threonine protein kinase Ppk9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 532
Score = 26.2 bits (55), Expect = 3.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 327 RFQHYNTVATNYHHPNIVTL 268
R Q T+ HHPNI+TL
Sbjct: 67 RLQREVTILRQLHHPNIITL 86
>SPAC23G3.03 |sib2||ornithine N5 monooxygenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 431
Score = 25.8 bits (54), Expect = 4.7
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = -2
Query: 390 EAHLQHW*YFLPTLSLLK--SV*RFQHYNTV 304
++H HW Y LPT + LK SV R +Y+ V
Sbjct: 247 DSHNSHWWYNLPTEARLKGLSVGRTTNYSVV 277
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,835
Number of Sequences: 5004
Number of extensions: 35805
Number of successful extensions: 102
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 101
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 101
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -