Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L09
(586 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_04_0043 + 16747103-16747137,16747237-16747259,16748735-167488... 93 1e-19
07_03_1222 - 24983294-24983356,24983695-24983858,24985209-249852... 82 4e-16
08_01_0523 + 4556309-4556311,4556434-4556515,4557528-4557548,455... 52 3e-07
05_07_0342 + 29402867-29402906,29403012-29403052,29403146-294032... 44 1e-04
02_01_0576 - 4270808-4270871,4271548-4271612,4271717-4271754,427... 40 0.001
02_01_0209 - 1399613-1399622,1399719-1399764,1399849-1399927,140... 38 0.004
08_01_0328 + 2959014-2959055,2959336-2959398,2960871-2960949,296... 38 0.006
05_04_0169 - 18694418-18694453,18694516-18694627,18696095-186962... 38 0.008
04_03_0736 - 19145428-19145474,19145608-19145721,19146707-191478... 33 0.17
11_06_0609 + 25444941-25444946,25445678-25445765,25446013-254460... 31 0.89
01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297 30 1.2
07_01_0479 + 3606663-3607448 30 1.6
01_01_1089 - 8560008-8560220,8560456-8560977,8561095-8561283,856... 29 2.7
11_06_0189 - 21039217-21039348,21039480-21039738,21039841-210400... 28 4.8
03_02_0909 - 12310460-12310759,12310882-12310989,12311099-123112... 28 6.3
>03_04_0043 +
16747103-16747137,16747237-16747259,16748735-16748856,
16748980-16749042
Length = 80
Score = 93.5 bits (222), Expect = 1e-19
Identities = 43/75 (57%), Positives = 58/75 (77%), Gaps = 1/75 (1%)
Frame = +1
Query: 112 MSKA-HPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGM 288
MS++ PP LKK+MDKKL IKLNA R + G LRGFD FMNLV+D +V E + ++GM
Sbjct: 1 MSRSGQPPDLKKYMDKKLQIKLNANRVIVGTLRGFDQFMNLVVDNTV-EVNGNDKTDIGM 59
Query: 289 VVIRGNSIIMLESLD 333
VV+RGNS++M+E+L+
Sbjct: 60 VVVRGNSVVMIEALE 74
>07_03_1222 -
24983294-24983356,24983695-24983858,24985209-24985231,
24985340-24985374
Length = 94
Score = 81.8 bits (193), Expect = 4e-16
Identities = 45/89 (50%), Positives = 60/89 (67%), Gaps = 15/89 (16%)
Frame = +1
Query: 112 MSKA-HPPXLKKFMDKKLS--------------IKLNAGRAVTGVLRGFDPFMNLVLDES 246
MS++ PP LKK+MDKKL +KLNA R V G LRGFD FMNLV+D +
Sbjct: 1 MSRSGQPPDLKKYMDKKLQTLMVYSFTLFSILPVKLNANRVVIGTLRGFDQFMNLVVDNT 60
Query: 247 VEECKDGQRNNVGMVVIRGNSIIMLESLD 333
V E ++N++GMVVIRGNS++M+E+L+
Sbjct: 61 V-EVNGNEKNDIGMVVIRGNSVVMIEALE 88
>08_01_0523 +
4556309-4556311,4556434-4556515,4557528-4557548,
4557824-4557895,4558259-4558311,4558721-4558807
Length = 105
Score = 52.0 bits (119), Expect = 3e-07
Identities = 31/81 (38%), Positives = 48/81 (59%), Gaps = 15/81 (18%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGR-------AVTGVLRGFDPFMNLVLDESVE---ECKD-----GQ 270
L KF+DK + +KL GR +VTG L+G+D +NLVLDE+VE E D G+
Sbjct: 11 LAKFVDKGVQVKLTGGRQVSFYGQSVTGTLKGYDQLLNLVLDEAVEFEREQDDPLKLSGK 70
Query: 271 RNNVGMVVIRGNSIIMLESLD 333
+G++V RG +++++ D
Sbjct: 71 TRQLGLIVCRGTAVMLVSPTD 91
>05_07_0342 +
29402867-29402906,29403012-29403052,29403146-29403220,
29403523-29403648,29404195-29404247,29404385-29404475
Length = 141
Score = 43.6 bits (98), Expect = 1e-04
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 252
P L+ +D+ +S+ N GR + G LRGFD N++LDES E
Sbjct: 6 PGLESLVDQIISVITNDGRNIVGTLRGFDQATNIILDESHE 46
>02_01_0576 -
4270808-4270871,4271548-4271612,4271717-4271754,
4272060-4272147,4272507-4272625,4273682-4273721
Length = 137
Score = 39.9 bits (89), Expect = 0.001
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Frame = +1
Query: 106 ITMSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNV 282
+T+ P L K + +KL G G L D +MNL L + EE DGQ N+
Sbjct: 53 VTVPVNPKPFLNNLTGKPVIVKLKWGMEYKGYLVSVDSYMNLQL-ANTEEYIDGQFSGNL 111
Query: 283 GMVVIRGNSIIMLESL 330
G ++IR N+++ L +
Sbjct: 112 GEILIRCNNVLYLRGV 127
>02_01_0209 -
1399613-1399622,1399719-1399764,1399849-1399927,
1400004-1400162,1400988-1401050,1401154-1401222
Length = 141
Score = 38.3 bits (85), Expect = 0.004
Identities = 16/40 (40%), Positives = 29/40 (72%), Gaps = 1/40 (2%)
Frame = +1
Query: 205 RGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 321
+GFD +MNLVLDE+ E K R ++G ++++G++I ++
Sbjct: 97 KGFDEYMNLVLDEAEEINIKKDTRKSLGRILLKGDNITLM 136
>08_01_0328 +
2959014-2959055,2959336-2959398,2960871-2960949,
2961038-2961083,2961566-2961671
Length = 111
Score = 37.9 bits (84), Expect = 0.006
Identities = 16/45 (35%), Positives = 31/45 (68%), Gaps = 1/45 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIML 321
+ G + GFD +MNLVLD++ E K R ++G ++++G++I ++
Sbjct: 30 IEGRIIGFDEYMNLVLDDAEEINVKKDTRKSLGRILLKGDNITLM 74
>05_04_0169 -
18694418-18694453,18694516-18694627,18696095-18696243,
18696980-18697033,18697110-18697222,18697323-18697374
Length = 171
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 3/71 (4%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGN 306
+ + + K+ + + + + G L GFD ++N+VL++ E +G+R + +++ GN
Sbjct: 84 IDRCIGSKIWVIMKGDKELVGTLCGFDVYVNMVLEDVTEYEYTAEGRRITKLDQILLNGN 143
Query: 307 SIIMLESLDRL 339
+I ++ +LD++
Sbjct: 144 NIAIVRNLDQI 154
>04_03_0736 -
19145428-19145474,19145608-19145721,19146707-19147870,
19150251-19150383
Length = 485
Score = 33.1 bits (72), Expect = 0.17
Identities = 16/48 (33%), Positives = 30/48 (62%), Gaps = 1/48 (2%)
Frame = +1
Query: 196 GVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESLDR 336
G+L D +MN+ ++++ EE +GQ +N G IRGN+++ + + R
Sbjct: 433 GILACLDGYMNIAMEQT-EEYVNGQLKNKYGDAFIRGNNVLYISTSKR 479
>11_06_0609 +
25444941-25444946,25445678-25445765,25446013-25446048,
25446069-25446106,25446219-25446283,25446622-25446685
Length = 98
Score = 30.7 bits (66), Expect = 0.89
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +1
Query: 196 GVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSIIMLESL 330
G L D +MNL L + EE DGQ N+G ++IR N+++ L +
Sbjct: 44 GYLVSVDSYMNLQL-ANTEEYIDGQFSGNLGEILIRCNNVLYLRGV 88
>01_06_1461 - 37520885-37520965,37521366-37521461,37522160-37522297
Length = 104
Score = 30.3 bits (65), Expect = 1.2
Identities = 16/71 (22%), Positives = 36/71 (50%), Gaps = 13/71 (18%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL-------------DESVEECKDGQRNNVGM 288
+D+++ +KL + R + G L +D +N++L DE+ EE + +
Sbjct: 27 LDERIYVKLRSDRELRGKLHAYDQHLNMILGDVEEIVTTVEIDDETYEEIVRTTKRTIPF 86
Query: 289 VVIRGNSIIML 321
+ +RG+ +I++
Sbjct: 87 LFVRGDGVILV 97
>07_01_0479 + 3606663-3607448
Length = 261
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVE 252
MS + +F++ ++ + + GR + G FD MNLVL + E
Sbjct: 1 MSNPKGSKMLQFVNYRMRVTIQDGRQLVGKFMAFDRHMNLVLGDCEE 47
>01_01_1089 -
8560008-8560220,8560456-8560977,8561095-8561283,
8561377-8561642,8561967-8562111,8562411-8562530,
8562611-8562930,8564161-8564341,8564434-8564580,
8565186-8565497,8566303-8566450,8566592-8566765,
8567385-8567446,8567499-8567571,8567628-8567683,
8568370-8568645,8569541-8569588,8569870-8569991,
8570258-8570413,8571037-8571079,8572624-8572701,
8572972-8573070,8573168-8573209,8573302-8573304
Length = 1264
Score = 29.1 bits (62), Expect = 2.7
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN-NVGMVVIRGNSI 312
LK + ++L G G L D +MN+ L E + KDG + + IRGN+I
Sbjct: 7 LKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECYIRGNTI 66
Query: 313 IMLESLDRL 339
L D +
Sbjct: 67 KYLRVPDEV 75
>11_06_0189 -
21039217-21039348,21039480-21039738,21039841-21040004,
21040371-21040533,21040615-21042137
Length = 746
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 214 DPFMNLVLDESVEECKDGQRNNV 282
DPF N ++ + +EEC D QR +
Sbjct: 466 DPFGNYLVQKLLEECSDDQRTRI 488
>03_02_0909 -
12310460-12310759,12310882-12310989,12311099-12311272,
12311370-12311490,12311569-12311651,12311754-12312420,
12314073-12314440
Length = 606
Score = 27.9 bits (59), Expect = 6.3
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 285 DGGNSWQQYYNAGIFRQTLVDLEWARNITNAVNVLHVSSI 404
+GG+ + Q Y G+FR+ L + + I +AV LH + I
Sbjct: 358 NGGHLFFQLYQQGLFREELARI-YTAEIVSAVAHLHANGI 396
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,167,058
Number of Sequences: 37544
Number of extensions: 207537
Number of successful extensions: 475
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 471
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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