Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L09
(586 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein. 128 1e-29
CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein. 128 1e-29
BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear ribonucle... 128 1e-29
BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear ribonucle... 128 1e-29
BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear ribonucle... 128 1e-29
BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear ribonucle... 128 1e-29
BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear ribonucle... 128 1e-29
BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear ribonucle... 128 1e-29
AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein. 128 1e-29
BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein. 104 2e-22
BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small ... 58 2e-08
AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated Sm-... 58 2e-08
AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated Sm-... 58 2e-08
BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small ... 47 6e-05
AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein. 47 6e-05
AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein. 47 6e-05
BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small ... 46 1e-04
AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein. 46 1e-04
AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated Sm-... 46 1e-04
AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein. 46 1e-04
BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small ... 45 2e-04
BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small ... 45 2e-04
AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated Sm-... 45 2e-04
AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1 prot... 45 2e-04
AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein. 44 4e-04
X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for ... 42 0.002
M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein... 42 0.002
M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small nuc... 42 0.002
M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmun... 42 0.002
BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear ribonucle... 42 0.002
BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear ribonucle... 42 0.002
AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear ribonucle... 42 0.002
BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein. 42 0.002
BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small ... 39 0.015
AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein. 39 0.015
AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated Sm-... 39 0.015
X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein. 34 0.32
CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein. 34 0.32
BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear ribonucle... 34 0.32
BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear ribonucle... 34 0.32
BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein. 34 0.32
BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear ribonucle... 34 0.32
AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear ribonucle... 30 5.2
>X85373-1|CAA59689.1| 76|Homo sapiens Sm protein G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>CR456918-1|CAG33199.1| 76|Homo sapiens SNRPG protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC106055-1|AAI06056.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC071880-1|AAH71880.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC070166-1|AAH70166.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC066302-1|AAH66302.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC022432-1|AAH22432.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC000070-1|AAH00070.1| 76|Homo sapiens small nuclear
ribonucleoprotein polypeptide G protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>AC079338-2|AAX81996.1| 76|Homo sapiens unknown protein.
Length = 76
Score = 128 bits (309), Expect = 1e-29
Identities = 59/76 (77%), Positives = 67/76 (88%)
Frame = +1
Query: 112 MSKAHPPXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMV 291
MSKAHPP LKKFMDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMV
Sbjct: 1 MSKAHPPELKKFMDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMV 60
Query: 292 VIRGNSIIMLESLDRL 339
VIRGNSIIMLE+L+R+
Sbjct: 61 VIRGNSIIMLEALERV 76
>BC035103-1|AAH35103.1| 64|Homo sapiens SNRPG protein protein.
Length = 64
Score = 104 bits (250), Expect = 2e-22
Identities = 48/64 (75%), Positives = 56/64 (87%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNSIIMLES 327
MDKKLS+KLN GR V G+LRGFDPFMNLV+DE VE GQ+NN+GMVVIRGNSIIMLE+
Sbjct: 1 MDKKLSLKLNGGRHVQGILRGFDPFMNLVIDECVEMATSGQQNNIGMVVIRGNSIIMLEA 60
Query: 328 LDRL 339
L+R+
Sbjct: 61 LERV 64
>BC018621-1|AAH18621.1| 103|Homo sapiens LSM7 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 103
Score = 58.0 bits (134), Expect = 2e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMV 291
L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+V
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 292 VIRGNSIIML 321
V RG S++++
Sbjct: 75 VCRGTSVVLI 84
>AF182293-1|AAD56231.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 58.0 bits (134), Expect = 2e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMV 291
L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+V
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 292 VIRGNSIIML 321
V RG S++++
Sbjct: 75 VCRGTSVVLI 84
>AC005258-2|AAG45442.1| 103|Homo sapiens U6 snRNA-associated
Sm-like protein LSm7 protein.
Length = 103
Score = 58.0 bits (134), Expect = 2e-08
Identities = 26/70 (37%), Positives = 43/70 (61%), Gaps = 8/70 (11%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMV 291
L K++DK + +K GR +G+L+GFDP +NLVLD ++E +D +G+V
Sbjct: 15 LSKYIDKTIRVKFQGGREASGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLV 74
Query: 292 VIRGNSIIML 321
V RG S++++
Sbjct: 75 VCRGTSVVLI 84
>BC001767-1|AAH01767.1| 133|Homo sapiens LSM1 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 133
Score = 46.8 bits (106), Expect = 6e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 318
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 319 LESLD 333
L +D
Sbjct: 74 LGEID 78
>AJ238094-1|CAB45865.1| 133|Homo sapiens Lsm1 protein protein.
Length = 133
Score = 46.8 bits (106), Expect = 6e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 318
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 319 LESLD 333
L +D
Sbjct: 74 LGEID 78
>AF000177-1|AAB62189.1| 133|Homo sapiens CaSm protein.
Length = 133
Score = 46.8 bits (106), Expect = 6e-05
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 3/65 (4%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNN---VGMVVIRGNSIIM 318
+DKK + L GR + G LR D F NLVL ++VE G++ G+ V+RG ++++
Sbjct: 14 IDKKHLVLLRDGRTLIGFLRSIDQFANLVLHQTVERIHVGKKYGDIPRGIFVVRGENVVL 73
Query: 319 LESLD 333
L +D
Sbjct: 74 LGEID 78
>BC016026-1|AAH16026.1| 80|Homo sapiens LSM6 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 80
Score = 45.6 bits (103), Expect = 1e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 312
LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N G IRGN++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNKYGDAFIRGNNV 70
Query: 313 IMLESLDR 336
+ + + R
Sbjct: 71 LYISTQKR 78
>AJ238098-1|CAB45869.1| 80|Homo sapiens Lsm6 protein protein.
Length = 80
Score = 45.6 bits (103), Expect = 1e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 312
LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N G IRGN++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNKYGDAFIRGNNV 70
Query: 313 IMLESLDR 336
+ + + R
Sbjct: 71 LYISTQKR 78
>AF182292-1|AAD56230.1| 80|Homo sapiens U6 snRNA-associated
Sm-like protein LSm6 protein.
Length = 80
Score = 45.6 bits (103), Expect = 1e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 312
LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N G IRGN++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNKYGDAFIRGNNV 70
Query: 313 IMLESLDR 336
+ + + R
Sbjct: 71 LYISTQKR 78
>AC097372-1|AAY41032.1| 80|Homo sapiens unknown protein.
Length = 80
Score = 45.6 bits (103), Expect = 1e-04
Identities = 25/68 (36%), Positives = 40/68 (58%), Gaps = 1/68 (1%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQ-RNNVGMVVIRGNSI 312
LK+ + + + +KLN+G GVL D +MN+ L E EE +GQ +N G IRGN++
Sbjct: 12 LKQIIGRPVVVKLNSGVDYRGVLACLDGYMNIAL-EQTEEYVNGQLKNKYGDAFIRGNNV 70
Query: 313 IMLESLDR 336
+ + + R
Sbjct: 71 LYISTQKR 78
>BC022440-1|AAH22440.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 303
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 304 NSIIMLESLD 333
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>BC002742-1|AAH02742.1| 96|Homo sapiens LSM8 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 303
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 304 NSIIMLESLD 333
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AF182294-1|AAD56232.1| 96|Homo sapiens U6 snRNA-associated
Sm-like protein LSm8 protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 303
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 304 NSIIMLESLD 333
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AC006389-1|AAD15542.1| 96|Homo sapiens WUGSC:H_RG437B22.1
protein.
Length = 96
Score = 44.8 bits (101), Expect = 2e-04
Identities = 19/70 (27%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 303
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 304 NSIIMLESLD 333
+++ ++ +D
Sbjct: 65 DNVAVIGEID 74
>AC005258-1|AAC25622.1| 145|Homo sapiens R30783_1 protein.
Length = 145
Score = 44.0 bits (99), Expect = 4e-04
Identities = 21/55 (38%), Positives = 34/55 (61%), Gaps = 8/55 (14%)
Frame = +1
Query: 181 GRAVTGVLRGFDPFMNLVLDESVEECKD--------GQRNNVGMVVIRGNSIIML 321
GR +G+L+GFDP +NLVLD ++E +D +G+VV RG S++++
Sbjct: 72 GRPRSGILKGFDPLLNLVLDGTIEYMRDPDDQYKLTEDTRQLGLVVCRGTSVVLI 126
>X12466-1|CAA31007.1| 92|Homo sapiens protein ( Human mRNA for
snRNP E protein. ).
Length = 92
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M37716-1|AAA90926.1| 92|Homo sapiens small nuclear RNA protein
(snRNP E) protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M21258-1|AAB59365.1| 92|Homo sapiens protein ( Human small
nuclear ribonucleoprotein (snRNP) E gene, exon 5 and Alu
repeats copy N and O. ).
Length = 92
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>M15919-1|AAA36621.1| 81|Homo sapiens protein ( Human autoimmune
antigen small nuclear ribonucleoprotein E mRNA. ).
Length = 81
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 32 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 79
>BC090951-1|AAH90951.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC002639-1|AAH02639.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>AL354707-4|CAH73282.1| 92|Homo sapiens small nuclear
ribonucleoprotein polypeptide E-like 1 protein.
Length = 92
Score = 41.9 bits (94), Expect = 0.002
Identities = 18/48 (37%), Positives = 33/48 (68%), Gaps = 1/48 (2%)
Frame = +1
Query: 190 VTGVLRGFDPFMNLVLDESVE-ECKDGQRNNVGMVVIRGNSIIMLESL 330
+ G + GFD +MNLVLD++ E K R +G ++++G++I +L+S+
Sbjct: 43 IEGCIIGFDEYMNLVLDDAEEIHSKTKSRKQLGRIMLKGDNITLLQSV 90
>BC045532-1|AAH45532.1| 67|Homo sapiens LSM8 protein protein.
Length = 67
Score = 41.5 bits (93), Expect = 0.002
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 4/63 (6%)
Frame = +1
Query: 136 LKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRN----NVGMVVIRG 303
L+ ++++ +++ + GR + G L+GFD +NL+LDES E + +G+ ++RG
Sbjct: 5 LENYINRTVAVITSDGRMIVGTLKGFDQTINLILDESHERVFSSSQGVEQVVLGLYIVRG 64
Query: 304 NSI 312
+++
Sbjct: 65 DNV 67
>BC005938-1|AAH05938.1| 91|Homo sapiens LSM5 homolog, U6 small
nuclear RNA associated (S. cerevisiae) protein.
Length = 91
Score = 38.7 bits (86), Expect = 0.015
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 142 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSI 312
K + ++ I + + + + G L GFD F+N+VL++ E +G+R + +++ GN+I
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 313 IML 321
ML
Sbjct: 80 TML 82
>AJ238097-1|CAB45868.1| 91|Homo sapiens Lsm5 protein protein.
Length = 91
Score = 38.7 bits (86), Expect = 0.015
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 142 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSI 312
K + ++ I + + + + G L GFD F+N+VL++ E +G+R + +++ GN+I
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 313 IML 321
ML
Sbjct: 80 TML 82
>AF182291-1|AAD56229.1| 91|Homo sapiens U6 snRNA-associated
Sm-like protein LSm5 protein.
Length = 91
Score = 38.7 bits (86), Expect = 0.015
Identities = 19/63 (30%), Positives = 37/63 (58%), Gaps = 3/63 (4%)
Frame = +1
Query: 142 KFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDE--SVEECKDGQR-NNVGMVVIRGNSI 312
K + ++ I + + + + G L GFD F+N+VL++ E +G+R + +++ GN+I
Sbjct: 20 KCIGSRIHIVMKSDKEIVGTLLGFDDFVNMVLEDVTEFEITPEGRRITKLDQILLNGNNI 79
Query: 313 IML 321
ML
Sbjct: 80 TML 82
>X85372-1|CAA59688.1| 86|Homo sapiens Sm protein F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.32
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 309
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 310 IIMLESLD 333
++ + ++
Sbjct: 69 VLYIRGVE 76
>CR456751-1|CAG33032.1| 86|Homo sapiens SNRPF protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.32
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 309
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 310 IIMLESLD 333
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC128453-1|AAI28454.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.32
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 309
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 310 IIMLESLD 333
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC128452-1|AAI28453.1| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.32
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 309
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 310 IIMLESLD 333
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC063397-1|AAH63397.2| 86|Homo sapiens SNRPF protein protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.32
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 309
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 310 IIMLESLD 333
++ + ++
Sbjct: 69 VLYIRGVE 76
>BC002505-1|AAH02505.3| 86|Homo sapiens small nuclear
ribonucleoprotein polypeptide F protein.
Length = 86
Score = 34.3 bits (75), Expect = 0.32
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +1
Query: 130 PXLKKFMDKKLSIKLNAGRAVTGVLRGFDPFMNLVLDESVEECKDGQRNNVGMVVIRGNS 309
P L K + +KL G G L D +MN+ L + E ++G V+IR N+
Sbjct: 9 PFLNGLTGKPVMVKLKWGMEYKGYLVSVDGYMNMQLANTEEYIDGALSGHLGEVLIRCNN 68
Query: 310 IIMLESLD 333
++ + ++
Sbjct: 69 VLYIRGVE 76
>AY742712-1|AAU89981.1| 231|Homo sapiens small nuclear
ribonucleoprotein polypeptide B protein.
Length = 231
Score = 30.3 bits (65), Expect = 5.2
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Frame = +1
Query: 148 MDKKLSIKLNAGRAVTGVLRGFDPFMNLVL---DE-------SVEECKDGQRNNVGMVVI 297
+D ++ L GR G + FD MNL+L DE + E+ + ++ +G+V++
Sbjct: 13 IDYRMRCILQDGRIFIGTFKAFDKHMNLILCDCDEFRKIKPKNSEQAEREEKRVLGLVLL 72
Query: 298 RGNSIIML 321
RG +++ +
Sbjct: 73 RGENLVSM 80
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 66,974,233
Number of Sequences: 237096
Number of extensions: 1209099
Number of successful extensions: 5264
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 3173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5264
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6098631048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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