Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L07
         (664 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily a...    29   2.2  
AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched famil...    29   2.2  
AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched famil...    29   2.2  
U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.     28   5.1  
U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC084153-4|AAK84598.2|  836|Caenorhabditis elegans Hypothetical ...    28   6.8  
U88177-3|AAB42292.1|  191|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (gr...    27   9.0  
AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical ...    27   9.0  

>AF077534-1|AAK71375.1| 1136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 218, isoform a protein.
          Length = 1136

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 22/78 (28%), Positives = 30/78 (38%), Gaps = 4/78 (5%)
 Frame = -3

Query: 491 HPARKRHTIEQSLTTCFAPIPLEGRRTLSSVCPLPPLCSEGPSCRAVSTQNGFL----SL 324
           H  +  H + +        IP+     LS+V P PPL S  PS   +     +L    + 
Sbjct: 129 HSKKDGHPVYEERCRVSLTIPISSSEDLSAVSPPPPLPSVPPSKERIKRIPSYLKPTPAP 188

Query: 323 RSWPGTRPPHRPSLFPAP 270
           RS   T P  R    P P
Sbjct: 189 RSMSATLPRARLKTPPPP 206


>AC024746-6|AAT92059.1| 1361|Caenorhabditis elegans Patched family
            protein 3, isoform b protein.
          Length = 1361

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 292  RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 411
            + GG+  G ++R+E+ P  VE +  D PS  S      DES
Sbjct: 1316 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1356


>AC024746-5|AAT92058.1| 1358|Caenorhabditis elegans Patched family
            protein 3, isoform a protein.
          Length = 1358

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = +1

Query: 292  RCGGLVPG-QERRERNPF*VETARHDGPSEQSGGSGQTDES 411
            + GG+  G ++R+E+ P  VE +  D PS  S      DES
Sbjct: 1313 KSGGVEGGMRKRKEKRPAEVEMSARDSPSTSSASHSSDDES 1353


>U70870-1|AAB51198.1| 1404|Caenorhabditis elegans CELF35-1 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 410 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLF---PAPICRSIAIYA 243
           L S+C P  P C + P+ + V++ + FLS+   P   P +   LF       C+S+A   
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSI---PRHYPLYLVGLFDLHSGQTCQSMAHTD 552

Query: 242 RVLPVLIFH 216
             LP+   H
Sbjct: 553 ISLPMAFVH 561


>U40934-5|AAA81683.2| 1404|Caenorhabditis elegans Hypothetical
           protein F35H10.10 protein.
          Length = 1404

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = -3

Query: 410 LSSVC-PLPPLCSEGPSCRAVSTQNGFLSLRSWPGTRPPHRPSLF---PAPICRSIAIYA 243
           L S+C P  P C + P+ + V++ + FLS+   P   P +   LF       C+S+A   
Sbjct: 496 LRSICAPYRPFCGQCPNLQIVNSDHHFLSI---PRHYPLYLVGLFDLHSGQTCQSMAHTD 552

Query: 242 RVLPVLIFH 216
             LP+   H
Sbjct: 553 ISLPMAFVH 561


>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
            K10D2.3 protein.
          Length = 1425

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 8/100 (8%)
 Frame = -3

Query: 647  RKSIDAGTXATCTRPCLPPELPXRFAAEGPCLTIAYGVEQCARVSAPARQVAHPARKRHT 468
            +K+ID    +      + PE   + + E P         QC  + AP   + + +    +
Sbjct: 832  QKNIDVAVTSMPVSTEIKPEPITKLSNEAPVKIKNVAQPQCDLIEAPQESLMNESMMESS 891

Query: 467  IEQSLTTCFAPI---PLE-----GRRTLSSVCPLPPLCSE 372
             +++ +    PI   P++     G+ T+S+V P    CSE
Sbjct: 892  FDETESPMKTPIVQKPVKQNATFGKSTISTVIPDKQFCSE 931


>AC084153-4|AAK84598.2|  836|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.9 protein.
          Length = 836

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -2

Query: 306 KATAPAFSIPSSNLSIDCDICESF-ASINLSRLLIRGSSTP 187
           K   P+ SI   NL+   ++CE+F  +I   R+L R  + P
Sbjct: 218 KMDTPSISIIRENLATIAELCENFQVAIEQRRILSRNGNMP 258


>U88177-3|AAB42292.1|  191|Caenorhabditis elegans Hypothetical
           protein F53E10.6 protein.
          Length = 191

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 364 DGPSEQSGGSGQTDESVRRPSRGIGAKHVVR 456
           +GPS   GG+G  DE+V  P+     K V++
Sbjct: 33  EGPSSVDGGAGDADETVAFPAIERRKKKVIK 63


>U64851-1|AAC47990.2|  186|Caenorhabditis elegans Ground-like (grd
           related) protein12 protein.
          Length = 186

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -2

Query: 549 NSLWGGTMCACICSSTPGS 493
           NSL+GG+ C C C+  P +
Sbjct: 21  NSLFGGSNCGCSCTPPPST 39


>AC006604-1|AAF39751.1|  484|Caenorhabditis elegans Hypothetical
           protein C07F11.2 protein.
          Length = 484

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 142 YLFAYLLPEFEYVDDFID 89
           Y    +LPE EYV+DF+D
Sbjct: 339 YFNKVVLPEMEYVEDFVD 356


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,490,345
Number of Sequences: 27780
Number of extensions: 309439
Number of successful extensions: 991
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)