Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L05
         (677 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    31   0.009
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   2.3  
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       21   9.3  

>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 31.1 bits (67), Expect = 0.009
 Identities = 19/86 (22%), Positives = 37/86 (43%)
 Frame = +1

Query: 271 SPTPCAEISDDELVSISVRDLNRQLKMRGLTRDQIVRMKQRRRTLKNRGYAASCRIKRIE 450
           SPTP  +++     S++V D N +      TR+Q+ R++   +      Y +  R   + 
Sbjct: 49  SPTPSDKLNTSTTSSVNVNDQNIRRYRTAFTREQLARLE---KEFFKENYVSRPRRCELA 105

Query: 451 QKDELENEKSQEWHDMELMQDENNRI 528
            +  L     + W     M+D+  R+
Sbjct: 106 AQLNLPESTIKVWFQNRRMKDKRQRM 131


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/48 (25%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +1

Query: 349 MRGLTRDQIVRMKQRRRTLKNRGYAASCRI-KRIEQKDELENEKSQEW 489
           ++G++      +++ R  +   G   S  I K+ E K+E+E+E   +W
Sbjct: 182 LQGISAPVEAHLRKGRGAIGAYGPEKSASIPKKKEVKEEIEDEPDHKW 229


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +3

Query: 375 CKNETTSPDSKKQRLCRLMP 434
           CKN  T  D  K  +CR  P
Sbjct: 153 CKNGGTCQDLGKTFMCRCPP 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,908
Number of Sequences: 336
Number of extensions: 3078
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17697850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)