Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L02
         (823 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    36   0.029
07_01_0161 + 1132505-1132704,1132839-1134075                           30   2.6  
08_02_1136 - 24614236-24615207                                         28   7.8  
01_06_0751 + 31690411-31690443,31692900-31694240                       28   7.8  

>07_01_0162 +
           1138420-1138640,1138788-1138830,1139449-1140971,
           1141770-1142063,1142145-1142337,1142624-1142694,
           1142781-1144200
          Length = 1254

 Score = 36.3 bits (80), Expect = 0.029
 Identities = 28/103 (27%), Positives = 49/103 (47%)
 Frame = +2

Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
           M+ A  I  +    TD ++  +  K +K   D+  + +D   K + +E DE+++++  C 
Sbjct: 142 MEAALEISSRWPRVTDASL-LRWRKKLKRTSDECSQIMDR-CKRRAMEDDEMEQEVRQCA 199

Query: 557 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKG 685
            P   +H TKS  ++    +  D S  T S  QRF+    G G
Sbjct: 200 FPKRIAHATKSFISSFTGQKKVD-SLITTSTIQRFERFANGAG 241


>07_01_0161 + 1132505-1132704,1132839-1134075
          Length = 478

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 24/101 (23%), Positives = 48/101 (47%)
 Frame = +2

Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
           M+ A  I  +    TD ++  +  K +K   D+  + ++   K + +E DE+++++  C 
Sbjct: 121 MEAALEISSRWPPVTDASL-LRWRKKLKRTSDECSQVMER-CKRRAMEDDEMEQEVRQCA 178

Query: 557 QPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKG 679
            P   +H T+S  ++    +  D S  T S  Q+F+    G
Sbjct: 179 FPKRIAHATRSFLSSFTGQKKVD-SLITTSTIQKFERLADG 218


>08_02_1136 - 24614236-24615207
          Length = 323

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +3

Query: 639 LVRTGSASMKLAKGRESPAGKTXSTGPATSLDTNIKILTINLTK 770
           L+RT ++S   A  R   A    +T  A + +  +KI TIN+++
Sbjct: 49  LLRTSTSSASAAASRAKDAADQSTTAAAVAAEEFVKIETINVSE 92


>01_06_0751 + 31690411-31690443,31692900-31694240
          Length = 457

 Score = 28.3 bits (60), Expect = 7.8
 Identities = 22/69 (31%), Positives = 33/69 (47%)
 Frame = +2

Query: 425 TAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 604
           TAI F  ++  +LG D   K +D L +N K  +DE+  +      P   S  T+ P    
Sbjct: 164 TAIRFYDVQD-RLGYDRPSKAVDWLMRNAKAAIDELPDRAEAPPPPAAAS--TEQP---E 217

Query: 605 AVDRLTDTS 631
           A ++ T TS
Sbjct: 218 ATEQATSTS 226


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,891,070
Number of Sequences: 37544
Number of extensions: 440215
Number of successful extensions: 1384
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1322
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1384
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2256438528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)