Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_L02
(823 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U88308-6|AAB42320.1| 180|Caenorhabditis elegans Hypothetical pr... 103 2e-22
U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog (hedg... 34 0.14
AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical ... 33 0.33
U53335-6|AAA96171.2| 518|Caenorhabditis elegans Hypothetical pr... 32 0.43
Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical pr... 30 2.3
Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical pr... 29 3.0
AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical... 29 3.0
Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical p... 29 4.0
Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical p... 29 4.0
Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical p... 29 4.0
Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical p... 29 4.0
X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein. 29 4.0
U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical pr... 29 4.0
AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical ... 29 4.0
AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical ... 29 4.0
AF101315-2|AAC69228.1| 990|Caenorhabditis elegans Hypothetical ... 29 4.0
Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical pr... 29 5.3
AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical ... 29 5.3
AF016682-8|AAO38605.1| 422|Caenorhabditis elegans Hypothetical ... 29 5.3
AF016424-8|AAB65328.2| 467|Caenorhabditis elegans Hypothetical ... 28 7.0
AF098995-11|AAC67488.2| 415|Caenorhabditis elegans Hypothetical... 28 9.3
AF024502-3|AAB70373.1| 836|Caenorhabditis elegans Hypothetical ... 28 9.3
AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical ... 28 9.3
>U88308-6|AAB42320.1| 180|Caenorhabditis elegans Hypothetical
protein C32E8.3 protein.
Length = 180
Score = 103 bits (247), Expect = 2e-22
Identities = 60/143 (41%), Positives = 81/143 (56%), Gaps = 10/143 (6%)
Frame = +2
Query: 368 DKWMKQAKVIDGKKITTTDTAIHFKKLKSVK--LGIDDYQKFL----DDLAKNKKV---- 517
DKW+K A V+D K IT T T I F K+ K D+ +K L +D A+ K
Sbjct: 38 DKWLKDAGVLDNKAITGTMTGIAFSKVTGPKKKATFDETKKVLAFVAEDRARQSKKPIQD 97
Query: 518 ELDEIKKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKYTGSHRQRFDETGKGKGIAGR 697
ELD I +KL P + + AA RLTD +KYTG+H++RFD GKGKG +GR
Sbjct: 98 ELDAITEKLAKLEAPSVGGAAKAN--AAGVYSRLTDHTKYTGAHKERFDAEGKGKGKSGR 155
Query: 698 KDLXDGSGYVTGYQHKDTYXKSH 766
D + +GYV Y++KD+Y K+H
Sbjct: 156 ADTTENTGYVGAYKNKDSYDKTH 178
>U41746-9|AAA83334.3| 559|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 6 protein.
Length = 559
Score = 33.9 bits (74), Expect = 0.14
Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 4/41 (9%)
Frame = +3
Query: 252 MERPVRARIAPYLSRKPSRRFPNLE----IPSPMEKPSRSR 362
+ERPV AR APY+ P+R P +E P P +P R+R
Sbjct: 210 IERPVPARPAPYIEPTPARPAPYIEPSTAKPQPRPQPPRTR 250
Score = 32.7 bits (71), Expect = 0.33
Identities = 16/30 (53%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = +3
Query: 252 MERPVRARIAPYLSR-KPSRRFPNLEIPSP 338
+ERPV AR APY+ R +P+R P +E P P
Sbjct: 186 IERPVPARPAPYIERPEPARPAPYIERPVP 215
Score = 31.1 bits (67), Expect = 1.00
Identities = 15/30 (50%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = +3
Query: 252 MERPVRARIAPYLSRK-PSRRFPNLEIPSP 338
+ERPV AR PY+ R P+R P +E P P
Sbjct: 174 IERPVPARPTPYIERPVPARPAPYIERPEP 203
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Frame = +3
Query: 252 MERPVRARIAPYLSRK-PSRRFPNLE----IPSPMEKPSRSR 362
+ERP AR APY+ R P+R P +E P+P +PS ++
Sbjct: 198 IERPEPARPAPYIERPVPARPAPYIEPTPARPAPYIEPSTAK 239
>AF024502-2|AAK77623.1| 591|Caenorhabditis elegans Hypothetical
protein M151.4 protein.
Length = 591
Score = 32.7 bits (71), Expect = 0.33
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 4/85 (4%)
Frame = +2
Query: 434 HFKKLKSVKLGIDDYQKFLDDLAK---NKKVELDEIKKKLTTCGQPGITSHVTKSPAAAA 604
+ ++ +K + D Q+ L+ +AK NK+ E++E+KK ++S + K+ AA
Sbjct: 216 YMNDMRDLKKALKDNQEGLEKIAKDVKNKEGEIEELKK--------SVSSEIVKATEAAH 267
Query: 605 AVDRL-TDTSKYTGSHRQRFDETGK 676
A D+L K H +R ++ K
Sbjct: 268 ATDQLRKKLQKQQDEHEKRVEQEHK 292
>U53335-6|AAA96171.2| 518|Caenorhabditis elegans Hypothetical
protein C55C3.5 protein.
Length = 518
Score = 32.3 bits (70), Expect = 0.43
Identities = 19/69 (27%), Positives = 32/69 (46%)
Frame = -1
Query: 406 LSINNFGLFHPFVALRERDGFSIGLGISKFGKRLEGFLER*GAILALTGRSIGCSRRVPV 227
++++ LF+P +A + RD + I GIS F F E GA+ + S +
Sbjct: 139 VTLSKCALFNPDIAFQLRDSWLINKGISAFSSMASSFFE--GALCSALSSSTNDLKHKAE 196
Query: 226 LKLDVLDFL 200
K + +FL
Sbjct: 197 RKFPIYEFL 205
>Z83223-6|CAB05719.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 29.9 bits (64), Expect = 2.3
Identities = 37/155 (23%), Positives = 62/155 (40%)
Frame = +2
Query: 173 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDXXXXXXXXXXXXXXXGDPKSDGKAI 352
T AVE+ T+EV + E AP A+ SS+ K K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMH------VNTIRNMIRSASEKDLSKYV 361
Query: 353 TLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEI 532
TL K+ + ++ + KK+T T K KL K L + A ++K + EI
Sbjct: 362 TLISEGKFSELFELAEQKKLTLTSKFDEKLSSKMAKL------KDLINEALSEKEKSGEI 415
Query: 533 KKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKY 637
++ + +P + V AV ++D+ K+
Sbjct: 416 EQAMEKFEKPEKSELVAMEDKDTPAVFTISDSLKH 450
>Z81538-6|CAB04387.1| 884|Caenorhabditis elegans Hypothetical
protein E01G4.6 protein.
Length = 884
Score = 29.9 bits (64), Expect = 2.3
Identities = 37/155 (23%), Positives = 62/155 (40%)
Frame = +2
Query: 173 TDAAVEQVTQEVKDVKLENGNAPGASNGTSSKSEDXXXXXXXXXXXXXXXGDPKSDGKAI 352
T AVE+ T+EV + E AP A+ SS+ K K +
Sbjct: 308 TTKAVEEATEEVTEEATEATEAPVATTKESSEMH------VNTIRNMIRSASEKDLSKYV 361
Query: 353 TLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEI 532
TL K+ + ++ + KK+T T K KL K L + A ++K + EI
Sbjct: 362 TLISEGKFSELFELAEQKKLTLTSKFDEKLSSKMAKL------KDLINEALSEKEKSGEI 415
Query: 533 KKKLTTCGQPGITSHVTKSPAAAAAVDRLTDTSKY 637
++ + +P + V AV ++D+ K+
Sbjct: 416 EQAMEKFEKPEKSELVAMEDKDTPAVFTISDSLKH 450
>Z80344-8|CAB02490.2| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
+K+ K + G++ + D +H +KL S+ D+Q+ + DL++++ V I KK+
Sbjct: 460 LKELKAVYGQEEDSLD--LH-EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKMNVDD 516
Query: 557 QPGITSHVTKSPAA 598
I+ + K P +
Sbjct: 517 IRTISPFLAKLPTS 530
>AL117203-22|CAB60425.1| 2268|Caenorhabditis elegans Hypothetical
protein F15D4.7 protein.
Length = 2268
Score = 29.5 bits (63), Expect = 3.0
Identities = 19/74 (25%), Positives = 39/74 (52%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
+K+ K + G++ + D +H +KL S+ D+Q+ + DL++++ V I KK+
Sbjct: 460 LKELKAVYGQEEDSLD--LH-EKLLSLPFDQYDWQEMIKDLSRHRSVVYQLINKKMNVDD 516
Query: 557 QPGITSHVTKSPAA 598
I+ + K P +
Sbjct: 517 IRTISPFLAKLPTS 530
>Z68760-15|CAL44969.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 362 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 421
Query: 557 QPGIT 571
P T
Sbjct: 422 PPAHT 426
>Z68760-13|CAD30434.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 323 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 382
Query: 557 QPGIT 571
P T
Sbjct: 383 PPAHT 387
>Z68760-12|CAD27623.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 336 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 395
Query: 557 QPGIT 571
P T
Sbjct: 396 PPAHT 400
>Z68760-11|CAA92997.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397
Query: 557 QPGIT 571
P T
Sbjct: 398 PPAHT 402
>X68070-1|CAA48207.1| 438|Caenorhabditis elegans Lin-3 protein.
Length = 438
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397
Query: 557 QPGIT 571
P T
Sbjct: 398 PPAHT 402
>U70856-2|AAB09164.1| 461|Caenorhabditis elegans Hypothetical
protein F57F4.1 protein.
Length = 461
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -1
Query: 319 FGKRLEGFLER*GAILALTGRSIGCSRRVPVLKLDVLDF 203
+GK GFL R LA T + C RV V +D ++F
Sbjct: 321 YGKIFGGFLMRKALELAYTNAKLYCKGRVAVRSMDHIEF 359
>AL032641-9|CAL44964.1| 462|Caenorhabditis elegans Hypothetical
protein F36H1.4d protein.
Length = 462
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 362 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 421
Query: 557 QPGIT 571
P T
Sbjct: 422 PPAHT 426
>AL032641-7|CAD30455.1| 423|Caenorhabditis elegans Hypothetical
protein F36H1.4c protein.
Length = 423
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 323 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 382
Query: 557 QPGIT 571
P T
Sbjct: 383 PPAHT 387
>AL032641-6|CAD27613.1| 436|Caenorhabditis elegans Hypothetical
protein F36H1.4b protein.
Length = 436
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 336 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 395
Query: 557 QPGIT 571
P T
Sbjct: 396 PPAHT 400
>AL032641-5|CAA21649.2| 438|Caenorhabditis elegans Hypothetical
protein F36H1.4a protein.
Length = 438
Score = 29.1 bits (62), Expect = 4.0
Identities = 15/65 (23%), Positives = 27/65 (41%)
Frame = +2
Query: 377 MKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTTCG 556
++ I + I DT H+K + V++ +Y +D + + E+ K TC
Sbjct: 338 LRSQGTIPSRSINDDDTPKHYKSVPRVEVSAINYSGHIDFSTVSYQSTESEVSKASVTCP 397
Query: 557 QPGIT 571
P T
Sbjct: 398 PPAHT 402
>AF101315-2|AAC69228.1| 990|Caenorhabditis elegans Hypothetical
protein T22H9.3 protein.
Length = 990
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = -2
Query: 732 PVT*PDPSXKSFLPAIPFPLPVSSKR 655
P T +PS FLP IPF +P ++R
Sbjct: 2 PTTVQNPSPTGFLPQIPFRIPKRTRR 27
>Z92808-1|CAB07266.2| 606|Caenorhabditis elegans Hypothetical
protein M04C3.2 protein.
Length = 606
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/71 (22%), Positives = 30/71 (42%)
Frame = +2
Query: 326 DPKSDGKAITLSQSDKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAK 505
D + A + + ++KQ + + +I F K+ K +DY+K + + K
Sbjct: 418 DDEEKSTAKLVKNIEGFLKQVTLRFPRSCKLYKISIQFTKISIFKFSANDYEKHITNAKK 477
Query: 506 NKKVELDEIKK 538
KK I+K
Sbjct: 478 EKKENEPNIRK 488
>AF016682-9|AAB66189.3| 441|Caenorhabditis elegans Hypothetical
protein T07D3.9a protein.
Length = 441
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -1
Query: 319 FGKRLEGFLER*GAILALTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 185
+GK GFL R LA T + C RV + +D ++F + H+LH
Sbjct: 301 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 350
>AF016682-8|AAO38605.1| 422|Caenorhabditis elegans Hypothetical
protein T07D3.9b protein.
Length = 422
Score = 28.7 bits (61), Expect = 5.3
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = -1
Query: 319 FGKRLEGFLER*GAILALTGRSIGCSRRVPVLKLDVLDF-----LCHLLH 185
+GK GFL R LA T + C RV + +D ++F + H+LH
Sbjct: 256 YGKIFGGFLMRKALELAHTNAKLYCKGRVAIRSMDQIEFQKPVEIGHVLH 305
>AF016424-8|AAB65328.2| 467|Caenorhabditis elegans Hypothetical
protein F39G3.2 protein.
Length = 467
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 264 VRARIAPYLSRKPSRRFPNLEIPS 335
+R R P R P+R FPNL++PS
Sbjct: 223 LRLRPWPSFGRLPTRLFPNLKLPS 246
>AF098995-11|AAC67488.2| 415|Caenorhabditis elegans Hypothetical
protein F58E1.11 protein.
Length = 415
Score = 27.9 bits (59), Expect = 9.3
Identities = 21/60 (35%), Positives = 33/60 (55%)
Frame = +2
Query: 371 KWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVELDEIKKKLTT 550
KW++ DGK+I T T FK++KS K+ +DD ++ K K V ++E LT+
Sbjct: 330 KWLR-----DGKQIGTVFTLSSFKEIKS-KILLDDVKRRF----KEKIVRVEESNGDLTS 379
>AF024502-3|AAB70373.1| 836|Caenorhabditis elegans Hypothetical
protein M151.3 protein.
Length = 836
Score = 27.9 bits (59), Expect = 9.3
Identities = 26/105 (24%), Positives = 51/105 (48%), Gaps = 3/105 (2%)
Frame = +2
Query: 350 ITLSQSDKWMKQAKVIDGKKITTT--DTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVEL 523
+TL+ K + K+ID +K + + KK+K ++ I+D ++ L ++ EL
Sbjct: 198 LTLNAMKKNEELQKLIDSQKKESRRFQDSARIKKMK-LEAQIEDLEEKLKFAEQHFHGEL 256
Query: 524 DEIKKKLTTCGQPGITSHVTKSPAAAAAVDR-LTDTSKYTGSHRQ 655
E TC + GI + K P+A + ++ L + S+ T ++
Sbjct: 257 QETCFSGETCLETGILGYRGKFPSAPSEAEKMLKEMSRTTNDAKK 301
>AC024791-5|AAF60661.2| 468|Caenorhabditis elegans Hypothetical
protein Y47G6A.14 protein.
Length = 468
Score = 27.9 bits (59), Expect = 9.3
Identities = 24/88 (27%), Positives = 38/88 (43%), Gaps = 2/88 (2%)
Frame = +2
Query: 347 AITLSQS--DKWMKQAKVIDGKKITTTDTAIHFKKLKSVKLGIDDYQKFLDDLAKNKKVE 520
A+T+ Q +K K A +D + T D ++ + D K+ D+ +N E
Sbjct: 77 AVTMIQKLREKPKKPANAVDCTQCTKYDNESDMFVCRNC---VTDAFKY--DVVENLGAE 131
Query: 521 LDEIKKKLTTCGQPGITSHVTKSPAAAA 604
+D K L CG + SHVT+ A
Sbjct: 132 VDLDIKSLALCGSCALRSHVTQGHETVA 159
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,599,980
Number of Sequences: 27780
Number of extensions: 367126
Number of successful extensions: 1268
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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