Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_L01
         (730 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   3.3  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    23   3.3  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   4.4  

>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 164 CCNATVERRHVTDVLYVVDL 105
           C N   ERRH+   + VV L
Sbjct: 60  CINQRCERRHIKGAIPVVSL 79


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 172 STIKAAVKIYKSQALQNGN 228
           +++ AA K+Y S+  QN N
Sbjct: 70  ASVAAACKLYSSEGQQNSN 88


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/29 (34%), Positives = 13/29 (44%)
 Frame = -1

Query: 109 ISAIDHRKHFGKYSQQPFLQAHEMLYFLS 23
           +S  DH   FGK    P   +  M Y +S
Sbjct: 64  VSRADHSPVFGKVEPVPHTSSFNMGYLVS 92


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,997
Number of Sequences: 336
Number of extensions: 3750
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)