Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K24
         (874 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   0.86 
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    27   3.5  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      27   3.5  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    27   4.6  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    27   4.6  
SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.6  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    26   6.1  
SPAC23H4.09 |cdb4||curved DNA-binding protein Cdb4|Schizosacchar...    26   6.1  
SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    26   8.1  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 29.1 bits (62), Expect = 0.86
 Identities = 33/148 (22%), Positives = 63/148 (42%), Gaps = 13/148 (8%)
 Frame = +3

Query: 102 EIEQKTNTMDPESFLDLANQVIKLKMYPYFDIAHSLLCALAVREDLGSGAQAFSRKHPLS 281
           E E+   ++DP+S L   N   K K+     +A+  LC+          A+A +    +S
Sbjct: 110 EPERFVFSIDPKSPLIAVNWPFKRKLKTTCILAYVALCSSFASSVFAVPAEAITTVFHIS 169

Query: 282 CWLSTM-LVIFAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVGYKVAKFL 458
             +S + + +F  G  +  ++  P+       P ++IG +  + +F     VG  +   +
Sbjct: 170 LTVSLLTMTVFLLGYCSGPIIWAPLSELSGRKPPILIG-MLGFGIFNISVAVGKDIQTIM 228

Query: 459 ------------PVKVVAAAMKEIYRAK 506
                       P+ VVAAA+ ++Y  K
Sbjct: 229 MCRFFAGFFASAPLTVVAAALADMYSNK 256


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = -1

Query: 265 LEKAWAPDPKSSLTARAHSNECAMSK 188
           L + WAPDP+++L    +S E  M+K
Sbjct: 365 LLERWAPDPRNTLLLTGYSVEGTMAK 390


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -2

Query: 681 CRSWVAWFPSQSGS 640
           C+SW+ W+PS+  S
Sbjct: 459 CQSWLVWYPSEDAS 472


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +3

Query: 309 FAGGMVANGLLGEPILAPLKNTPQLVIGTVTWYLVFYTPFDVG 437
           F  G++  G +  P+L  L   PQ V+  + W + F   F  G
Sbjct: 379 FIQGLMTVGTMTGPLLLVLHQIPQCVLAGLFWVMGFSAIFGNG 421


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 798 LSSILLGIHDPFVPFXNLFCALFM 869
           +S ILL +  PFV F N FC   +
Sbjct: 506 ISFILLAVFRPFVGFKNSFCVFLV 529


>SPBC29A3.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 398

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/49 (28%), Positives = 21/49 (42%)
 Frame = -1

Query: 307 ITSIVDSQHDSGCFLEKAWAPDPKSSLTARAHSNECAMSKYGYIFNFMT 161
           + SIV    D    L   WA   +  L  +  S E  + KY  + N++T
Sbjct: 142 LKSIVQGIRDKDLKLPIEWASQCRGYLERKGSSLEYTLQKYRLVSNYLT 190


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = -1

Query: 394 VPMTNWGVFFNGAKMGSPRRPLATI 320
           VP T  G+F +GAK  SP + L  I
Sbjct: 207 VPSTAIGIFSHGAKQSSPLQQLGRI 231


>SPAC23H4.09 |cdb4||curved DNA-binding protein
           Cdb4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 381

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 480 AMKEIYRAKKVYDGVSHAAKLYPN 551
           A+K++YR K  Y G++    + PN
Sbjct: 63  AIKKVYRTKDAYKGIAFPTAVSPN 86


>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 25.8 bits (54), Expect = 8.1
 Identities = 13/45 (28%), Positives = 20/45 (44%)
 Frame = -1

Query: 829 GSWMPRSMEESLK*TKKXTIPK*TSAWGAEIKSVFLSNTKITEAT 695
           G+W   +M+  L+   K  I + TS W   + SV  + T     T
Sbjct: 20  GAWWTSAMDTKLQTKMKEIIDQHTSTWTPVVSSVTSTQTDTLRVT 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,692,280
Number of Sequences: 5004
Number of extensions: 77597
Number of successful extensions: 197
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)