Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K24
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1786 - 29507906-29508898                                         28   8.5  
07_03_1698 + 28803971-28804534,28804614-28804696,28804780-288049...    28   8.5  
05_07_0043 - 27284814-27285190,27285287-27285488,27285576-272856...    28   8.5  

>07_03_1786 - 29507906-29508898
          Length = 330

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 2/100 (2%)
 Frame = +2

Query: 155 QSGHKVENVSIFRHSAFVAVRSCSQRRFG--IRCPGLFQEASTVMLAVHYASDIRRRYGS 328
           QS H+   +  F++    A+++  +R     + C  +   A+   +A+     +  R G 
Sbjct: 93  QSSHRSFGMRNFKY--ITAIKAAVERECPATVSCADILALAARDGVAMLGGPSVAMRTGR 150

Query: 329 QWSSRRTHFGAVEEYTPISHRNCYMVLSFLHAFRCRLQGS 448
           +  SR +++G VE+Y P  + +   VLS   A     +G+
Sbjct: 151 R-DSRESYYGVVEQYIPNHNDSVSTVLSRFAAIGVDTEGA 189


>07_03_1698 +
           28803971-28804534,28804614-28804696,28804780-28804900,
           28804982-28805155,28805245-28805349,28805439-28805765
          Length = 457

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 415 KTKY--HVTVPMTNWG-VFFNGAKMGSPRRPLATIPPANITSIVDSQHDSG 272
           +TKY  ++ +   N G +FF   K G  R  LA I  A I S V   HD+G
Sbjct: 188 QTKYRLYLVLDFINGGHLFFQLYKQGLFREELARIYTAEIVSAVAHLHDNG 238


>05_07_0043 -
           27284814-27285190,27285287-27285488,27285576-27285650,
           27285743-27285816,27285909-27285996,27286081-27286203,
           27288374-27288580,27288631-27288636
          Length = 383

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = -1

Query: 355 KMGSPRRPLATIPPANITSIVDSQHDSGCFLE----KAWAPDPKSSLTARAH 212
           +M +PR+P + I P NI+S       +G   E    K +AP P + +T   H
Sbjct: 284 EMETPRKPFSQITPGNISSAPVRPISTGGTEENRTPKTFAPVPTTPMTVSPH 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,146,239
Number of Sequences: 37544
Number of extensions: 560796
Number of successful extensions: 1346
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)