Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K22
         (869 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe...    28   2.0  
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb...    27   4.6  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    27   4.6  
SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    26   6.1  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    26   6.1  
SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        26   8.0  

>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 719

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = +2

Query: 587 IVWVLCILNSNTPYGLISVRTCFPMCLESQPTTGYRMYLYQ 709
           IV  L +L + T    I++  CF       PT G R  LYQ
Sbjct: 101 IVLCLVLLKNKTVISPITLLQCFFPLFRENPTRGVRELLYQ 141


>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 228 ASSGLANILRVIRASAVRTVSDNNLRANIAECTIY-ACTTGLFNVNDT 88
           ASSG   I+ +  ASA+ T+SD +    + E   +    T ++N  D+
Sbjct: 388 ASSGHVLIIPIAHASALSTLSDTSYEKTLNEMNRFRKAVTDMYNACDS 435


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -2

Query: 793 GYFRPNEVE-LYNSYNAESRFI-YRYSNIGLI*VHAITCGRLRLEAH 659
           GY R   +   +++Y   S+ I Y+YSN+  +   A+ CG+     H
Sbjct: 3   GYIRTLFIRNRFSNYRLRSQIIKYKYSNVSYLNKSALRCGQATDSTH 49


>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1516

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 5/54 (9%)
 Frame = -2

Query: 763  YNSYNAESRFIYRYSNIGLI*VHAITCGRLRLEAHWKTG---SYRYQTI--WCI 617
            Y  YNA  R IYR+ N     V A     +     WK G   SY Y  +  WC+
Sbjct: 1307 YEIYNALIRSIYRFIN-----VEAFNSLFIDERGSWKRGTNISYNYHVLKDWCL 1355


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 26.2 bits (55), Expect = 6.1
 Identities = 26/88 (29%), Positives = 43/88 (48%)
 Frame = +2

Query: 383 LFRLFTVFRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTAL*RLLVKIL 562
           +F+ F V+R LH+I++A I   Q S++ A+   + I               L  L + + 
Sbjct: 410 IFQAF-VWRFLHSIIHAFILFYQ-SKSKAW-TKHFIRNGESAAYAWSQWKGLYNLTLNMS 466

Query: 563 TVTFLHLFIVWVLCILNSNTPYGLISVR 646
            ++F+     W L  L SN  YGL+S+R
Sbjct: 467 YISFV--MAAWKLYHLPSNWTYGLVSLR 492


>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = +1

Query: 538 VKTFSENTYCDLPA 579
           +  F++NTYC+LPA
Sbjct: 63  ISLFNKNTYCELPA 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,660,108
Number of Sequences: 5004
Number of extensions: 79216
Number of successful extensions: 205
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 198
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)