Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K22
         (869 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0670 - 27128153-27129075,27129152-27129266,27129348-271295...    31   1.6  
03_05_1101 - 30408944-30410410                                         29   3.7  
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151...    29   6.4  
12_02_0870 - 23852923-23853228,23853416-23853728,23853813-238539...    28   8.5  
07_03_1394 + 26254438-26254950                                         28   8.5  
06_02_0046 + 10928708-10928798,10929997-10930077,10930567-109306...    28   8.5  

>04_04_0670 -
           27128153-27129075,27129152-27129266,27129348-27129537,
           27129652-27129786,27129874-27129971,27131075-27131764
          Length = 716

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 23/104 (22%), Positives = 44/104 (42%)
 Frame = +2

Query: 224 DAKMLRGGKVKYDDPVVERIRRAHLNDLENIPAFWILGAFYVTTGPAATFATLLFRLFTV 403
           D+  L+  K   D PV++ + R  +   +NIP++     +   T  A     ++F     
Sbjct: 400 DSSKLKNAKKGEDMPVLDELHRNEVFTTDNIPSWLAFSGYLGLTFIAVIAIPMMFHEMKW 459

Query: 404 FRILHTIVYAVIPLPQPSRAIAFGIPYIIMLYMGIQVILYYVTA 535
           + ++  I Y + P      A   G+  I M Y   ++ L+ + A
Sbjct: 460 YYVV--IAYLLAPALGFCNAYGAGLTDINMAYNYGKIALFILAA 501


>03_05_1101 - 30408944-30410410
          Length = 488

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = -3

Query: 300 FKWARRILSTTGSSYLTFPPLSIFASSGLANILRVIRASAVR 175
           F WA  I +  G   LTF P+ +F    + N++  +RA  +R
Sbjct: 132 FWWATDIAAELGVPRLTFSPVGVFPQLAMNNLV-TVRAEIIR 172


>03_05_0720 +
           27114301-27114548,27114647-27114926,27115104-27115154,
           27115679-27116000,27116610-27116718,27116754-27116802
          Length = 352

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = +1

Query: 568 DLPAFIYCLGFVHTKFEYTIWSDICKNLFSNVPRVATDHRLSHVPISTQCYYI 726
           ++P     L   ++ F  T WS I  +L      V   H+L +  IS   YY+
Sbjct: 296 NIPMQALPLALEYSSFNQTRWSFINTSLLEQARSVVLVHKLMNPSISPSIYYV 348


>12_02_0870 -
           23852923-23853228,23853416-23853728,23853813-23853938,
           23854038-23854243,23854311-23854443,23854607-23854688,
           23854785-23854914,23855034-23855126,23855211-23855333,
           23855786-23855977,23858230-23858394,23858697-23858768,
           23858826-23858945,23859873-23859949,23860032-23860398,
           23860738-23861871
          Length = 1212

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +1

Query: 514 NPVLCHSTVKTFSENTYCDLPAFIYCL---GFVHTKFEYTIWSD 636
           N +L  +   TFS N+ C  PA        G++HT F   +W D
Sbjct: 807 NQMLSPAGTLTFSRNSMCGSPARTVGWRDPGYIHTSFLKELWPD 850


>07_03_1394 + 26254438-26254950
          Length = 170

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = -3

Query: 456 EG*GNGITA*TMVCRIRNTVNNRKRSVANVAAG 358
           +G G+G  A   VCR+R  +  R+R VA  AAG
Sbjct: 26  DGDGDGEEAAAGVCRVRRQLRLRRRVVAAGAAG 58


>06_02_0046 +
           10928708-10928798,10929997-10930077,10930567-10930685,
           10931275-10931894,10931992-10933184,10933280-10933359,
           10933751-10933846,10933931-10934004,10936007-10936151,
           10936323-10936487
          Length = 887

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 7/85 (8%)
 Frame = +1

Query: 307 GEYSRILDTRSVLCDYWTGSNIRNASFPIVYRVPYSAHHRLRCYSITSAFK----SYSFR 474
           G +  I+  +S  C YW        +    + +P      +   S+TSA       YS  
Sbjct: 175 GNWKTIMHEQSNQCYYWN-----TVTGETSWEIPNVLASEIAADSVTSASAPTHVDYSME 229

Query: 475 ---HTLHHNAVHGYPSNPVLCHSTV 540
              H L HNAV  YPS+  + + +V
Sbjct: 230 AQAHALTHNAVEAYPSDISVLNGSV 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,463,412
Number of Sequences: 37544
Number of extensions: 460987
Number of successful extensions: 974
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2444475072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)