Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K20
         (660 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0880 + 22203440-22204324,22204763-22204876,22204964-222054...    29   4.3  
05_07_0100 + 27679280-27680320                                         29   4.3  
07_01_0040 + 325737-328181                                             28   5.7  
01_06_0412 + 29159918-29160046,29160148-29160297,29160385-291604...    28   5.7  
11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584           28   7.6  
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754           28   7.6  
03_06_0187 + 32209924-32210634                                         28   7.6  

>08_02_0880 +
           22203440-22204324,22204763-22204876,22204964-22205455,
           22205646-22205819,22206589-22206978,22209927-22210022,
           22210645-22210760,22210872-22211042,22211126-22211285,
           22211388-22211573,22211665-22211793,22211918-22211996,
           22212159-22212268
          Length = 1033

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 610 TLMRCSSTTFMVLSNFXWTCFLSLSRARRGPAPRSTVP 497
           +L RCSST+  +   F W    S + A R P P    P
Sbjct: 118 SLSRCSSTSSRIRKKFAWLRSPSPAPAPRAPTPSEPPP 155


>05_07_0100 + 27679280-27680320
          Length = 346

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +3

Query: 510 RGAGPRRARDKLRKQVHXKLDNTMKVVDEQRIRVMEGSWS 629
           RGA  RR   +   Q   ++D   K    +R RVM  +WS
Sbjct: 81  RGAAARRRPPRTDVQCKNRVDTLKKKYKAERARVMPSTWS 120


>07_01_0040 + 325737-328181
          Length = 814

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 184 CTWHKKTDPRLMILFHVFSREK 119
           C WHK+  P + +L +VF R K
Sbjct: 504 CCWHKEEKPHVDVLTYVFDRLK 525


>01_06_0412 +
           29159918-29160046,29160148-29160297,29160385-29160447,
           29160540-29160716,29160796-29160899,29162142-29162249,
           29162336-29162432,29162540-29162637,29162718-29162859,
           29162941-29163063,29163161-29163259
          Length = 429

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +2

Query: 332 EPSTXTRPGCAVPGPADATSPXSPDTCGLALVGPQDQA 445
           E ST T     VP P+DAT+P    + G A   P+  A
Sbjct: 307 ERSTATNVEIEVPVPSDATNPNIRTSMGSAAYAPERDA 344


>11_01_0793 - 6978688-6980234,6982769-6982843,6983383-6983584
          Length = 607

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 501 CRFLVTFQLSGLAVSSVVGAWSWGPTSA 418
           C  LV F++ G  ++  + AW WG  SA
Sbjct: 494 CHHLVIFRVHGNTLTGNLPAWVWGQQSA 521


>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
          Length = 203

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/41 (43%), Positives = 22/41 (53%), Gaps = 4/41 (9%)
 Frame = -3

Query: 550 FLSLSRARRGPAPR--STVPFPC--NVSAVRVSGVKCRRSL 440
           F+ L   RR PAPR  +T+P  C   VS+V  S   CR  L
Sbjct: 42  FIELCIGRRSPAPRLSTTLPLACCHRVSSVYRSRWHCRLGL 82


>03_06_0187 + 32209924-32210634
          Length = 236

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = +2

Query: 335 PSTXTRPGCAVPGPADATSPXSPDTCGLALVGPQDQAPTTL 457
           P+  T PG    GP   T P  P   G+  VGP   A  T+
Sbjct: 54  PAIPTIPGVPAVGPTIPTIPTVPTIPGVPAVGPTIPAIPTI 94


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,143,874
Number of Sequences: 37544
Number of extensions: 407945
Number of successful extensions: 1135
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)