Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_K20
(660 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2 ... 33 0.90
BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-... 33 0.90
BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-... 33 0.90
AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-... 33 0.90
AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-... 33 0.90
AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein. 33 0.90
DQ079590-1|AAZ30918.1| 858|Homo sapiens ZXD-like zinc finger pr... 32 1.6
AY936556-1|AAX23974.1| 858|Homo sapiens ZXD family zinc finger ... 32 1.6
BC053688-1|AAH53688.1| 890|Homo sapiens Rho GTPase activating p... 31 4.8
BC043387-1|AAH43387.1| 601|Homo sapiens ARHGAP30 protein protein. 31 4.8
AL591806-12|CAI15375.1| 924|Homo sapiens Rho GTPase activating ... 31 4.8
AL591806-11|CAI15374.1| 890|Homo sapiens Rho GTPase activating ... 31 4.8
AL591806-10|CAI15373.1| 577|Homo sapiens Rho GTPase activating ... 31 4.8
AK160366-1|BAD18709.1| 1110|Homo sapiens FLJ00267 protein protein. 31 4.8
AK126116-1|BAC86447.1| 499|Homo sapiens protein ( Homo sapiens ... 31 4.8
U82483-1|AAC13661.1| 382|Homo sapiens vascular addressin MAdCAM... 30 6.4
BC128464-1|AAI28465.1| 235|Homo sapiens myc target 1 protein. 30 6.4
BC128463-1|AAI28464.1| 235|Homo sapiens myc target 1 protein. 30 6.4
BC022556-1|AAH22556.2| 220|Homo sapiens MYCT1 protein protein. 30 6.4
AL390960-1|CAI23573.1| 235|Homo sapiens myc target 1 protein. 30 6.4
AK024922-1|BAB15035.1| 235|Homo sapiens protein ( Homo sapiens ... 30 6.4
AF527367-1|AAM88866.1| 235|Homo sapiens MTLC protein. 30 6.4
X17406-1|CAA35463.1| 600|Homo sapiens cartilage specific proteo... 30 8.4
M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila... 30 8.4
J05062-1|AAA35726.1| 480|Homo sapiens protein ( Human cartilage... 30 8.4
>DQ139275-1|ABA43896.1| 1313|Homo sapiens Tax1-binding protein 2
protein.
Length = 1313
Score = 33.1 bits (72), Expect = 0.90
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 PARVAVPGGTDAQXXXXXXXXXXDEPSTXT-RPGCAVPGPADATSPXSPD 406
PA VPG + PST PG P P ATSP SPD
Sbjct: 755 PAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 804
>BX284668-3|CAH70057.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 33.1 bits (72), Expect = 0.90
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 PARVAVPGGTDAQXXXXXXXXXXDEPSTXT-RPGCAVPGPADATSPXSPD 406
PA VPG + PST PG P P ATSP SPD
Sbjct: 1333 PAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1382
>BX284668-2|CAH70055.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 33.1 bits (72), Expect = 0.90
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 PARVAVPGGTDAQXXXXXXXXXXDEPSTXT-RPGCAVPGPADATSPXSPD 406
PA VPG + PST PG P P ATSP SPD
Sbjct: 1452 PAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>AL049569-4|CAI20365.1| 1898|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 1898
Score = 33.1 bits (72), Expect = 0.90
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 PARVAVPGGTDAQXXXXXXXXXXDEPSTXT-RPGCAVPGPADATSPXSPD 406
PA VPG + PST PG P P ATSP SPD
Sbjct: 1333 PAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1382
>AL049569-3|CAI20363.1| 2017|Homo sapiens ciliary rootlet coiled-coil,
rootletin protein.
Length = 2017
Score = 33.1 bits (72), Expect = 0.90
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 PARVAVPGGTDAQXXXXXXXXXXDEPSTXT-RPGCAVPGPADATSPXSPD 406
PA VPG + PST PG P P ATSP SPD
Sbjct: 1452 PAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1501
>AB007914-1|BAA32290.2| 1919|Homo sapiens KIAA0445 protein protein.
Length = 1919
Score = 33.1 bits (72), Expect = 0.90
Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
Frame = +2
Query: 260 PARVAVPGGTDAQXXXXXXXXXXDEPSTXT-RPGCAVPGPADATSPXSPD 406
PA VPG + PST PG P P ATSP SPD
Sbjct: 1354 PAPRPVPGSPARDAPAEGSGEGLNSPSTLECSPGSQPPSPGPATSPASPD 1403
>DQ079590-1|AAZ30918.1| 858|Homo sapiens ZXD-like zinc finger
protein protein.
Length = 858
Score = 32.3 bits (70), Expect = 1.6
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = -1
Query: 495 FLVTFQLS-GLAVSSVVGAWSWGPTS----ASPQVSGEXGEVASAGPGTAQPGRVYVEXX 331
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 330 XXXXXXXXXXGCASVPPGTAT 268
S PPG AT
Sbjct: 135 DLLVRLDRGVLALSAPPGPAT 155
>AY936556-1|AAX23974.1| 858|Homo sapiens ZXD family zinc finger C
protein.
Length = 858
Score = 32.3 bits (70), Expect = 1.6
Identities = 25/81 (30%), Positives = 31/81 (38%), Gaps = 5/81 (6%)
Frame = -1
Query: 495 FLVTFQLS-GLAVSSVVGAWSWGPTS----ASPQVSGEXGEVASAGPGTAQPGRVYVEXX 331
FLV ++ G A + G+ P S AS G G A+ GPG A G V +
Sbjct: 75 FLVLLEVPHGGAAAEAAGSQEAEPGSRVNLASRPEQGPSGPAAAPGPGVAPAGAVTISSQ 134
Query: 330 XXXXXXXXXXGCASVPPGTAT 268
S PPG AT
Sbjct: 135 DLLVRLDRGVLALSAPPGPAT 155
>BC053688-1|AAH53688.1| 890|Homo sapiens Rho GTPase activating
protein 30 protein.
Length = 890
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 458 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 505
>BC043387-1|AAH43387.1| 601|Homo sapiens ARHGAP30 protein protein.
Length = 601
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 310 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 357
>AL591806-12|CAI15375.1| 924|Homo sapiens Rho GTPase activating
protein 30 protein.
Length = 924
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 281 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 328
>AL591806-11|CAI15374.1| 890|Homo sapiens Rho GTPase activating
protein 30 protein.
Length = 890
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 458 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 505
>AL591806-10|CAI15373.1| 577|Homo sapiens Rho GTPase activating
protein 30 protein.
Length = 577
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 458 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 505
>AK160366-1|BAD18709.1| 1110|Homo sapiens FLJ00267 protein protein.
Length = 1110
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 467 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 514
>AK126116-1|BAC86447.1| 499|Homo sapiens protein ( Homo sapiens
cDNA FLJ44128 fis, clone THYMU2007060, weakly similar
to Mus musculus Cdc42 GTPase-activating protein mRNA. ).
Length = 499
Score = 30.7 bits (66), Expect = 4.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 335 PSTXTRPGCAV-PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P++ PG + PGP D SP + LA GP D AP D+ + +
Sbjct: 310 PASGPGPGPGLGPGPPDEKLEASPASSPLADSGPDDLAPALEDSLSQE 357
>U82483-1|AAC13661.1| 382|Homo sapiens vascular addressin MAdCAM-1
protein.
Length = 382
Score = 30.3 bits (65), Expect = 6.4
Identities = 15/36 (41%), Positives = 19/36 (52%)
Frame = +2
Query: 368 PGPADATSPXSPDTCGLALVGPQDQAPTTLDTANPD 475
P P D TSP SPDT + P +P DT +P+
Sbjct: 230 PEPPDTTSPESPDT--TSPESPDTTSPEPPDTTSPE 263
>BC128464-1|AAI28465.1| 235|Homo sapiens myc target 1 protein.
Length = 235
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 580 MVLSNFXWTCFLSLSRARRGPAPRS 506
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>BC128463-1|AAI28464.1| 235|Homo sapiens myc target 1 protein.
Length = 235
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 580 MVLSNFXWTCFLSLSRARRGPAPRS 506
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>BC022556-1|AAH22556.2| 220|Homo sapiens MYCT1 protein protein.
Length = 220
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 580 MVLSNFXWTCFLSLSRARRGPAPRS 506
+VL F W F+ LSR RR AP S
Sbjct: 65 LVLGGFIWAVFICLSRRRRASAPIS 89
>AL390960-1|CAI23573.1| 235|Homo sapiens myc target 1 protein.
Length = 235
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 580 MVLSNFXWTCFLSLSRARRGPAPRS 506
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>AK024922-1|BAB15035.1| 235|Homo sapiens protein ( Homo sapiens
cDNA: FLJ21269 fis, clone COL01745. ).
Length = 235
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 580 MVLSNFXWTCFLSLSRARRGPAPRS 506
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>AF527367-1|AAM88866.1| 235|Homo sapiens MTLC protein.
Length = 235
Score = 30.3 bits (65), Expect = 6.4
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = -3
Query: 580 MVLSNFXWTCFLSLSRARRGPAPRS 506
+VL F W F+ LSR RR AP S
Sbjct: 80 LVLGGFIWAVFICLSRRRRASAPIS 104
>X17406-1|CAA35463.1| 600|Homo sapiens cartilage specific
proteoglycan (600 AA) protein.
Length = 600
Score = 29.9 bits (64), Expect = 8.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 474 SGLAVSSVVGAWSWGPTSASPQVSGEXGEVASAGPGTAQPG 352
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 253 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 291
>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
proteoglycan core protein protein.
Length = 2316
Score = 29.9 bits (64), Expect = 8.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 474 SGLAVSSVVGAWSWGPTSASPQVSGEXGEVASAGPGTAQPG 352
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 2030 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 2068
>J05062-1|AAA35726.1| 480|Homo sapiens protein ( Human
cartilage-specific proteoglycan core protein (CSPCP)
mRNA, 3' end. ).
Length = 480
Score = 29.9 bits (64), Expect = 8.4
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = -1
Query: 474 SGLAVSSVVGAWSWGPTSASPQVSGEXGEVASAGPGTAQPG 352
SGL VS + G SA+P+VSGE ++ GT PG
Sbjct: 95 SGLGVSGSTLTFQEGEASAAPEVSGE--STTTSDVGTEAPG 133
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,659,764
Number of Sequences: 237096
Number of extensions: 2354862
Number of successful extensions: 6679
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 5985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6646
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7422585720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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