Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K14
         (678 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    34   0.001
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    27   0.16 
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    24   1.5  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   3.5  
AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc fi...    22   4.7  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 33.9 bits (74), Expect = 0.001
 Identities = 22/87 (25%), Positives = 36/87 (41%), Gaps = 5/87 (5%)
 Frame = +2

Query: 152 SLXVKMGRKKKKASKPW-CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGL 316
           S  +K+  +     KP+ C  C + F    +L  HQ A    K +KC +CH+   +   +
Sbjct: 216 SKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLCHETFGSKKTM 275

Query: 317 SIHCMQVHKEAIDKVPNSLPNRSNIEI 397
            +H       ++   P   P    IEI
Sbjct: 276 ELHIKTHSDSSVVGSPRDSPIEPEIEI 302



 Score = 28.7 bits (61), Expect = 0.054
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +2

Query: 194 KPW-CWYCNREFDDEKILIQHQ----KAKHFKCHICHKKLYTGPGLSIHCMQVH 340
           KP+ C YC++ F  ++ L  H+    K + +KC +C +       L  H M++H
Sbjct: 118 KPYQCEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRH-MRIH 170



 Score = 24.6 bits (51), Expect = 0.88
 Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 5/53 (9%)
 Frame = +2

Query: 182 KKASKPW-CWYCNREFDDEKILIQHQKA----KHFKCHICHKKLYTGPGLSIH 325
           K+   P+ C  C + F     L +H +     K ++C  C K       LS+H
Sbjct: 86  KEGEDPYRCNICGKTFAVPARLTRHYRTHTGEKPYQCEYCSKSFSVKENLSVH 138


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 27.1 bits (57), Expect = 0.16
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 6/53 (11%)
 Frame = +2

Query: 203 CWYCNREFDDEKILIQHQKAKH------FKCHICHKKLYTGPGLSIHCMQVHK 343
           C YC R F     L +H + KH      + C  C+++  T   L+ H    H+
Sbjct: 8   CPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTHKSLQHR 60


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = +2

Query: 251 HQKAKHFKCHICHKKLYTGPGLSIHCMQVH 340
           H   K F+C  CHK+      L  H M++H
Sbjct: 4   HTGEKPFECPECHKRFTRDHHLKTH-MRLH 32


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 233 RRQTPCYNTSTKVWMPSSSSYPF*RXTIN 147
           RR+TP YN+ +K+   S   +P     IN
Sbjct: 411 RRRTPRYNSVSKIDRASRIVFPLFFLAIN 439


>AB208107-1|BAE72139.1|   71|Apis mellifera Broad complex zinc
           finger domain-Z2 isoform protein.
          Length = 71

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2

Query: 263 KHFKCHICHKKLYTGPGLSIHCMQVHKE 346
           K F C +C K L +   L  H    H E
Sbjct: 4   KLFTCQLCGKVLCSKASLKRHVADKHAE 31



 Score = 21.8 bits (44), Expect = 6.2
 Identities = 13/53 (24%), Positives = 20/53 (37%), Gaps = 6/53 (11%)
 Frame = +2

Query: 203 CWYCNREFDDEKILIQHQKAKH------FKCHICHKKLYTGPGLSIHCMQVHK 343
           C  C +    +  L +H   KH      ++C IC +   +   L  H    HK
Sbjct: 8   CQLCGKVLCSKASLKRHVADKHAERQEEYRCVICERVYCSRNSLMTHIYTYHK 60


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,091
Number of Sequences: 438
Number of extensions: 2979
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)