Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K11
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo...    27   1.1  
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||...    25   3.2  
SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|c...    24   5.6  
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    24   5.6  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    24   7.5  
SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces po...    24   7.5  

>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
           Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 963

 Score = 26.6 bits (56), Expect = 1.1
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 184 TIMLIYESSRRIVSARSPQSASKEDCT 104
           +I L Y+S RR VSAR+  SAS    T
Sbjct: 281 SIPLSYQSKRRRVSARASSSASSSSRT 307


>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 601

 Score = 25.0 bits (52), Expect = 3.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +3

Query: 159 LLSYINIIVELNLQSSHHMKSVHATINYI 245
           LLS   + VE+N++  HH K+ H  I  I
Sbjct: 499 LLSKTVLEVEVNIEVIHHEKAKHLIIEMI 527


>SPAC212.08c |||GPI anchored protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 278

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 150 MRLLLSYINII-VELNLQSSHHMKSVHATIN 239
           MR  L Y NI  V +N   +H M  VH T+N
Sbjct: 133 MRKSLPYGNIHDVWINTTDTHQMIGVHMTLN 163


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 79  KEGMASK*KYSPPWMHFEETAPKQCVYCSRILTL 180
           +E +A   KY   WMHF E +    ++ S +L L
Sbjct: 83  EEDVAELEKYEL-WMHFSEASLMPFIWASHVLDL 115


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 130  EETAPKQCVYCSRILTLLSSSICSQVTI*NPFMPQ*IIL 246
            ++  P   VY SRI  L++   C ++   + F P  + L
Sbjct: 1210 QDLIPNSSVYISRINVLVTEQSCRRILKDSHFFPPRVTL 1248


>SPBC16D10.03 |pgp2||metallopeptidase Pgp2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 346

 Score = 23.8 bits (49), Expect = 7.5
 Identities = 7/35 (20%), Positives = 19/35 (54%)
 Frame = -2

Query: 205 LDCKLSSTIMLIYESSRRIVSARSPQSASKEDCTF 101
           +DC  S  +  +  ++  ++  ++P S +K+D  +
Sbjct: 208 MDCSFSGLLSGVEAAATELLDPKNPSSVTKQDLCY 242


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,048,337
Number of Sequences: 5004
Number of extensions: 16361
Number of successful extensions: 33
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)