Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K11
         (341 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0149 - 18441561-18442082,18442723-18442861,18443295-184433...    26   6.7  
01_07_0198 - 41918276-41918408,41918486-41918841,41919091-419192...    26   6.7  

>05_04_0149 -
           18441561-18442082,18442723-18442861,18443295-18443352,
           18443630-18443664,18444528-18444886,18445304-18445450,
           18445849-18447954,18448300-18448494,18448629-18448709,
           18448758-18448874,18449281-18449370,18449466-18449552,
           18450293-18450315,18450675-18450804
          Length = 1362

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = +2

Query: 128 LRRPRRNNASTALVY*HYCRAQFAVKS--------PYEI-RSCHNKL 241
           LRR R N  + ALV+ H C ++ ++K+        PY +  SC++KL
Sbjct: 743 LRRKRHNCYNCALVFCHACSSKKSLKASLAPNPNKPYRVCDSCYSKL 789


>01_07_0198 -
           41918276-41918408,41918486-41918841,41919091-41919237,
           41919666-41921789,41922150-41922344,41922488-41922568,
           41923325-41923414,41923507-41923593,41923914-41923961
          Length = 1086

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 9/47 (19%)
 Frame = +2

Query: 128 LRRPRRNNASTALVY*HYCRAQFAVKS--------PYEI-RSCHNKL 241
           LRR R N  + ALV+ H C ++ ++K+        PY +  SC++KL
Sbjct: 669 LRRKRHNCYNCALVFCHSCSSKKSLKASLAPNPNKPYRVCDSCYSKL 715


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,740,389
Number of Sequences: 37544
Number of extensions: 96254
Number of successful extensions: 150
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)