Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K11
         (341 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical pr...    31   0.22 
AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical ...    28   1.5  
AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine re...    27   4.7  

>Z46794-6|CAA86776.1|  416|Caenorhabditis elegans Hypothetical
           protein R06F6.6 protein.
          Length = 416

 Score = 31.1 bits (67), Expect = 0.22
 Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = -2

Query: 166 ESSRRIVSARSPQSASKEDCTFI*TPFLLSLIKHALKQIIKLSSKQVLK*F-NRPA 2
           E SRR  +  SP+ A++ +  +I   ++    +H L Q +KLS  QV   F NR A
Sbjct: 128 EKSRRKRTTFSPEQATRLEAEYIGDSYMAREKRHLLAQSLKLSENQVKTWFQNRRA 183


>AL032655-2|CAB60457.1|  561|Caenorhabditis elegans Hypothetical
           protein Y6B3B.4 protein.
          Length = 561

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +1

Query: 118 WMHFEETAPKQCVYCSRILTLLSSSI 195
           W   E  AP+QC  CS + T++ S +
Sbjct: 458 WPSTEHLAPRQCSLCSAVSTVIHSDL 483


>AF016414-3|AAW88405.1|  329|Caenorhabditis elegans Serpentine
           receptor, class h protein210, isoform b protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 156 DALFRRGLLKVHPRRTVLSFRRHSFFH 76
           +A+FR G    H R   +SF RHS  H
Sbjct: 303 NAIFRFGKRGTHHRTASISFIRHSHLH 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,865,874
Number of Sequences: 27780
Number of extensions: 90181
Number of successful extensions: 204
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)