Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_K10
(753 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0597 - 23526705-23526749,23526794-23526905,23527068-235271... 165 3e-41
02_05_0840 - 32118332-32118376,32118420-32118531,32119074-321191... 165 3e-41
12_02_0943 - 24662147-24662195,24662440-24662834,24662979-246630... 31 0.74
11_06_0341 - 22507098-22507982,22508616-22508783,22518740-225188... 30 1.7
03_04_0085 - 17182662-17182963,17183044-17183101,17183564-171836... 30 1.7
11_06_0553 - 24920428-24921057,24921149-24921276,24921372-249214... 28 9.2
05_01_0425 - 3347604-3347708,3348394-3348466,3349917-3350581,335... 28 9.2
03_02_0372 + 7864015-7864065,7864167-7864208,7864292-7864322,786... 28 9.2
02_05_0278 + 27404914-27404947,27405088-27405228,27405747-274057... 28 9.2
>01_05_0597 -
23526705-23526749,23526794-23526905,23527068-23527134,
23527439-23527566,23527638-23527750,23527827-23527972,
23528419-23528525,23528667-23528873,23530878-23531129,
23531324-23531406
Length = 419
Score = 165 bits (402), Expect = 3e-41
Identities = 75/94 (79%), Positives = 82/94 (87%)
Frame = +1
Query: 472 YEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGHNA 651
Y +PLKI+SYKDLYGWTMD+IV IG KNNCTFCGVFRRQALDRGAA+L V I TGHNA
Sbjct: 226 YGLPLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNA 285
Query: 652 DDIAETVLMNVLRGDIARLKRCTAITTGSEGTIP 753
DDIAETVL+N+LRGDIARL RCT ITTG +G IP
Sbjct: 286 DDIAETVLLNILRGDIARLSRCTFITTGEDGPIP 319
Score = 54.0 bits (124), Expect = 1e-07
Identities = 41/117 (35%), Positives = 54/117 (46%), Gaps = 18/117 (15%)
Frame = +1
Query: 157 CKRGCGNNAVLKRPKTGDAIC------------------KECFFWAFETEIHYTITKGKL 282
C R A LKRPKT + +C +ECF+ FE EIH TI + L
Sbjct: 142 CTRCSERKAALKRPKTLEQLCLYAPHIFRVVCPDVSRQSRECFYIVFEDEIHQTIVENNL 201
Query: 283 FNKGDSVAVAASGGKDSTVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETV 453
F GD VA+ ASGGK +A T L YGL L ++S + DD ++ +
Sbjct: 202 FKPGDRVAIGASGGK----VADTTDLL----QYGLPLKIISYKDLYGWTMDDIVKAI 250
>02_05_0840 -
32118332-32118376,32118420-32118531,32119074-32119196,
32119267-32119379,32119460-32119605,32120048-32120162,
32120360-32120473
Length = 255
Score = 165 bits (401), Expect = 3e-41
Identities = 75/94 (79%), Positives = 82/94 (87%)
Frame = +1
Query: 472 YEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCGVFRRQALDRGAAMLNVKCIATGHNA 651
Y +PLKI+SYKDLYGWTMD+IV IG KNNCTFCGVFRRQALDRGAA+L V I TGHNA
Sbjct: 86 YGLPLKIVSYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNA 145
Query: 652 DDIAETVLMNVLRGDIARLKRCTAITTGSEGTIP 753
DDIAETVL+N+LRGDIARL RCT ITTG +G IP
Sbjct: 146 DDIAETVLLNILRGDIARLSRCTFITTGEDGPIP 179
Score = 71.3 bits (167), Expect = 8e-13
Identities = 44/100 (44%), Positives = 55/100 (55%), Gaps = 1/100 (1%)
Frame = +1
Query: 157 CKRGCGNN-AVLKRPKTGDAICKECFFWAFETEIHYTITKGKLFNKGDSVAVAASGGKDS 333
C R CG A LKRPKT + IC+ECF+ FE EIH TI LF GD VA+ ASGGK
Sbjct: 20 CTR-CGERKAALKRPKTLEQICRECFYVVFEDEIHQTIVDNNLFKPGDRVAIGASGGK-- 76
Query: 334 TVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRDDSLETV 453
+A T L YGL L ++S + DD ++ +
Sbjct: 77 --VADTTDLL----QYGLPLKIVSYKDLYGWTMDDIVKAI 110
>12_02_0943 -
24662147-24662195,24662440-24662834,24662979-24663057,
24663129-24663250,24663363-24663449,24663543-24663891,
24664227-24664540
Length = 464
Score = 31.5 bits (68), Expect = 0.74
Identities = 18/57 (31%), Positives = 23/57 (40%)
Frame = +1
Query: 169 CGNNAVLKRPKTGDAICKECFFWAFETEIHYTITKGKLFNKGDSVAVAASGGKDSTV 339
CG A G +C ECF + +T + DSV +A SGG S V
Sbjct: 50 CGGGAAAVAVAGGLGLCGECFRANLLGKFKLAVTSNAMVRPTDSVLLAFSGGPASRV 106
>11_06_0341 -
22507098-22507982,22508616-22508783,22518740-22518893,
22519396-22519728,22521106-22521374
Length = 602
Score = 30.3 bits (65), Expect = 1.7
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 2/45 (4%)
Frame = +1
Query: 328 DSTVLAHTLKTLNERYNYGLNLMLLSIDEGITGYRD--DSLETVK 456
DS L+H L + E Y G +L L+ID+G TG+ + DSL T K
Sbjct: 383 DSKNLSHELLSAIE-YLTGCSLKSLAIDDGFTGFLNLMDSLSTPK 426
>03_04_0085 -
17182662-17182963,17183044-17183101,17183564-17183638,
17183730-17183864,17183986-17184165,17184315-17184365,
17184537-17184637,17185562-17185620,17185701-17185816,
17186668-17186853,17187337-17187399,17187440-17187521,
17188221-17188312,17189153-17189296,17190056-17190136,
17190815-17190898,17191465-17191566,17191922-17192017,
17192239-17192299,17192418-17192521
Length = 723
Score = 30.3 bits (65), Expect = 1.7
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = +1
Query: 367 ERYNYGLNLMLLSIDEGITGYRDDSLETVKQNRDD 471
ER++ G+ + L++DE + D+SLE ++Q DD
Sbjct: 16 ERFDLGVLVGDLALDEDVASDEDESLEGLRQELDD 50
>11_06_0553 -
24920428-24921057,24921149-24921276,24921372-24921409,
24921522-24921734,24921906-24921998,24922089-24922276,
24922396-24922502,24922614-24922775,24922870-24922953,
24923060-24923168,24923340-24923468,24923504-24923556,
24923654-24923759,24924082-24924189
Length = 715
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Frame = +1
Query: 268 TKGKLFNKGDSVAVAASGGKDSTVLAHTLKTLNERYNY 381
+KG LF KG+ A A+G VL +K E N+
Sbjct: 51 SKGTLFLKGEGQAQEAAGSPQGVVLEEEIKVKEEFNNH 88
>05_01_0425 -
3347604-3347708,3348394-3348466,3349917-3350581,
3350609-3351088,3351253-3351534
Length = 534
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +1
Query: 415 GITGYRDDSLE-TVKQNRDDYEMPLKILSYKDLYGWTMDEIVAQIGRKNNCTFCG 576
G+ G R + +V + D+ M ++ GW E + ++ R+ +CT CG
Sbjct: 372 GLAGMRTTMMAASVAEANDNEGMEFDRGGEEEAGGWKGKEAMGRVSRRRSCTPCG 426
>03_02_0372 +
7864015-7864065,7864167-7864208,7864292-7864322,
7864472-7864653
Length = 101
Score = 27.9 bits (59), Expect = 9.2
Identities = 9/28 (32%), Positives = 13/28 (46%)
Frame = +3
Query: 600 PRCCDVKCEMYSDRSQCR*YCRDCSHEC 683
P+ CD +C + C YC C +C
Sbjct: 44 PQKCDYRCSATKRQEPCLKYCNICCQKC 71
>02_05_0278 +
27404914-27404947,27405088-27405228,27405747-27405772,
27406036-27406071,27406296-27406976
Length = 305
Score = 27.9 bits (59), Expect = 9.2
Identities = 11/39 (28%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +1
Query: 352 LKTLNERYNYGLNLMLLSID-EGITGYRDDSLETVKQNR 465
+ T+N R++YG+++ +++ ++GYR D L + +R
Sbjct: 111 IPTVNARFDYGVSIFVMTYSFVAVSGYRVDDLAALVLDR 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,016,039
Number of Sequences: 37544
Number of extensions: 415299
Number of successful extensions: 1020
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 989
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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