Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_K07
(871 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc... 29 1.1
SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch... 27 2.6
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb... 27 3.5
SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr 1... 27 3.5
SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein |Schi... 27 4.6
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces... 26 6.1
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ... 26 8.0
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 26 8.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 26 8.0
SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa... 26 8.0
>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1958
Score = 28.7 bits (61), Expect = 1.1
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = -1
Query: 493 RCYHCIIDQFRCSHSRFHGKVICFLGHC 410
RC C+ + + F GK++CF HC
Sbjct: 1828 RCSKCLTEPMEPAICLFCGKLLCFQSHC 1855
>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 891
Score = 27.5 bits (58), Expect = 2.6
Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
Frame = +1
Query: 319 PGILGTGHTYNSAANSAGLSHTDALSASVSHSGPENKLPCHGNGCGSIGTGQLYSGNNVP 498
P + GT N +++ A L + + V GP +P GC Q N P
Sbjct: 747 PFLSGTPSIANQSSSIASLQFGRMVDSLV---GPVQPIPAQTTGCSVHSLQQRTFSNESP 803
Query: 499 GSSYDGFVSGPQTFTNVENKFP-CSGN 576
+ GF F+ + +P SGN
Sbjct: 804 RAVDSGFSRTSTPFSESTSSYPLVSGN 830
>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 504
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 334 TGHTYNSAANSAGLSHTDALSASVSHSGPENKLP 435
T T N ++A L HT ++S +HS PEN P
Sbjct: 107 TWGTLNKDHSNAILLHTGLSASSHAHSHPENTAP 140
>SPAC1399.01c |||purine permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 27.1 bits (57), Expect = 3.5
Identities = 14/43 (32%), Positives = 19/43 (44%)
Frame = +1
Query: 301 DLGNHGPGILGTGHTYNSAANSAGLSHTDALSASVSHSGPENK 429
DL N PG+ T N G+ D+LS + + ENK
Sbjct: 549 DLTNDSPGLSTTNGVNNGIVEVRGIDPNDSLSNTDTEYANENK 591
>SPBC11C11.05 |||KRE9 family cell wall biosynthesis protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 284
Score = 26.6 bits (56), Expect = 4.6
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 464 ELVNYTVVTTYQGHPTMDS*VAHKPLQMWKINFRVLETAVEP 589
E +Y+V TT+ G P S V P M+ + TA +P
Sbjct: 206 ETSSYSVFTTFAGPPIATSTVFASPTYMYTLYANYASTASKP 247
>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 6.1
Identities = 12/38 (31%), Positives = 21/38 (55%)
Frame = +1
Query: 676 SGNNTPCSGSTCKVNGIESSYDDNNAXVSSHPSIPSGS 789
SG++TP SGS+ + S N +SS+P + + +
Sbjct: 239 SGDSTPLSGSSSSKGMLMSMSTSENHSLSSNPELSNSN 276
>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 561
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/46 (39%), Positives = 22/46 (47%)
Frame = +1
Query: 694 CSGSTCKVNGIESSYDDNNAXVSSHPSIPSGSHTHHNGGNKLLCSG 831
C S+ K GI S+ N V S S SH +HNG + L SG
Sbjct: 487 CLSSSIK-GGIRLSFSKNPLGVRSS----SSSHNNHNGNVRNLHSG 527
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = -1
Query: 628 LKQQHSHMMNQLQWFHSRFQNTE 560
L + H+ + LQW+H RF N E
Sbjct: 320 LPEPGKHLFH-LQWYHDRFHNIE 341
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.8 bits (54), Expect = 8.0
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +1
Query: 652 SGTHSLSDSGNNTPCSGSTCKVNGIESSYDDNNAXVSSHPSIPSGSHTHHNGGNKLLCSG 831
S + + S ++TP + SS N+ ++S S +G T+ N GN + SG
Sbjct: 541 SANSTTATSASSTPLTSVNSTTATSASSTPFGNSTITSSASGSTGEFTNTNSGNGDV-SG 599
Query: 832 KDCSXANTP 858
+ +TP
Sbjct: 600 SVTTPTSTP 608
>SPAC3C7.06c |pit1||serine/threonine protein kinase
Pit1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 650
Score = 25.8 bits (54), Expect = 8.0
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = -1
Query: 523 LRIHRRMTLVRCYHCIIDQFRCSH 452
LR+ +V + IDQFRC H
Sbjct: 88 LRLSENENIVNIFDLYIDQFRCLH 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.315 0.134 0.428
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,368,051
Number of Sequences: 5004
Number of extensions: 70508
Number of successful extensions: 148
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 146
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 434475230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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