Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_K07
         (871 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           27   0.23 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.6  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -3

Query: 785 PLGIE-G*DDTXALLSSYDDSIPLTLQVLPEHGVLFPESLR 666
           PLG+E   D     L  + D IP+TL  +P+H       LR
Sbjct: 189 PLGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKTKSPKLR 229


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +1

Query: 670 SDSGNNTPCSGSTCKVNGIESSYDDNNAXVSSHPSIPSGSHTHH 801
           +++ NN   +G+    NG  +S ++NN  +  H  +  G + HH
Sbjct: 243 NNNNNNNNNNGANDNGNGNGASNNNNNGDMFCHTGL--GHYGHH 284


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.315    0.134    0.428 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 228,728
Number of Sequences: 438
Number of extensions: 5594
Number of successful extensions: 8
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28159464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)