Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_K06
(795 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein. 24 1.9
AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein. 24 1.9
AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein. 24 1.9
AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1al... 24 1.9
X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alp... 23 2.5
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 4.3
AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein. 22 5.7
DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein. 21 10.0
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 21 10.0
>AY336529-1|AAQ02340.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 431 LVKTGRLCVMTPTNWWKDV*LLAE 502
L G+L +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350
>AY336528-1|AAQ02339.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 431 LVKTGRLCVMTPTNWWKDV*LLAE 502
L G+L +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350
>AY217097-1|AAO39761.1| 712|Apis mellifera transferrin protein.
Length = 712
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/24 (41%), Positives = 13/24 (54%)
Frame = +2
Query: 431 LVKTGRLCVMTPTNWWKDV*LLAE 502
L G+L +WWKD+ LL E
Sbjct: 327 LTDLGKLGEEEKADWWKDIMLLNE 350
>AF015267-1|AAC38959.1| 461|Apis mellifera elongation factor-1alpha
F2 protein.
Length = 461
Score = 23.8 bits (49), Expect = 1.9
Identities = 10/33 (30%), Positives = 16/33 (48%)
Frame = +2
Query: 14 SKKYGWCTDKSDSGTQNHIWALLGLWQLMSTMY 112
S KY W DK + + I + LW+ ++ Y
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETSKY 85
>X52884-1|CAA37066.1| 461|Apis mellifera elongation factor 1 alpha
protein.
Length = 461
Score = 23.4 bits (48), Expect = 2.5
Identities = 10/33 (30%), Positives = 15/33 (45%)
Frame = +2
Query: 14 SKKYGWCTDKSDSGTQNHIWALLGLWQLMSTMY 112
S KY W DK + + I + LW+ + Y
Sbjct: 53 SFKYAWVLDKLKAERERGITIDIALWKFETAKY 85
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 385 RPKYLVVN-ADEGEPGTCKDREIMRHD 462
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 385 RPKYLVVN-ADEGEPGTCKDREIMRHD 462
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 385 RPKYLVVN-ADEGEPGTCKDREIMRHD 462
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 385 RPKYLVVN-ADEGEPGTCKDREIMRHD 462
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 4.3
Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Frame = +1
Query: 385 RPKYLVVN-ADEGEPGTCKDREIMRHD 462
+P L+ N ADEG GT + ++ HD
Sbjct: 70 KPDILMYNSADEGFDGTYQTSVVVTHD 96
>AJ849455-1|CAH60991.1| 366|Apis mellifera twist protein protein.
Length = 366
Score = 22.2 bits (45), Expect = 5.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = -3
Query: 661 HRGVRIYQSHNQNH 620
HR + IYQSH+ H
Sbjct: 64 HRDLPIYQSHHHLH 77
>DQ257416-1|ABB81847.1| 552|Apis mellifera yellow-h protein.
Length = 552
Score = 21.4 bits (43), Expect = 10.0
Identities = 8/26 (30%), Positives = 14/26 (53%)
Frame = -2
Query: 410 ALTTRYFGRPSEGLFMNDHFIPVGKP 333
A++T G D+F+P+G+P
Sbjct: 403 AVSTSILGDKKTAEENTDYFMPIGRP 428
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 21.4 bits (43), Expect = 10.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = -3
Query: 478 PPVCGGHDA*SPCLYKYQVHP 416
PP G +Y+YQ+HP
Sbjct: 997 PPWLEGVHVTPELIYEYQIHP 1017
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 249,571
Number of Sequences: 438
Number of extensions: 5836
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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