Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J20
         (825 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_03_0048 + 11880848-11880952,11881030-11881312,11882667-118827...    52   6e-07
06_01_0327 + 2377121-2377812,2377911-2378265                           30   2.6  
06_01_0322 - 2335577-2335931,2336030-2336991                           30   2.6  
04_04_0384 - 24853689-24853727,24853802-24853861,24854311-248543...    29   3.4  
11_01_0461 + 3569700-3572373,3572477-3572847                           29   5.9  
06_01_0733 + 5405889-5405922,5405923-5405975,5406430-5406543,540...    29   5.9  

>09_03_0048 +
           11880848-11880952,11881030-11881312,11882667-11882770,
           11883998-11884416,11884698-11884998,11885136-11885232,
           11885719-11885864,11885975-11886103
          Length = 527

 Score = 52.0 bits (119), Expect = 6e-07
 Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 8/76 (10%)
 Frame = +2

Query: 71  KTLICGDVNGNFNALFTRVESIVKKSGQFDLLLCVGTFFGDDNSQLDA--------YKMG 226
           + L+ GD NG  + LF RV S+ + +G F  LLCVG FF  D    D         Y  G
Sbjct: 15  RILLAGDANGRLHQLFKRVTSVNQSTGPFHALLCVGQFFSPDAGDGDGGGGGEVADYLEG 74

Query: 227 TRKVPVTTYVFGPSNP 274
              VP+ TY  G   P
Sbjct: 75  RAAVPIPTYFTGDYGP 90



 Score = 41.1 bits (92), Expect = 0.001
 Identities = 25/64 (39%), Positives = 33/64 (51%)
 Frame = +2

Query: 623 RYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALXPVGNNLKEKWIYACSLQPISXMR 802
           R+    SK  F+ R+PY + S         TRFI L  VGN  K+K+I+A S  P S M 
Sbjct: 125 RFTLHGSKGVFYAREPYVSDSAAH-----VTRFIGLANVGNKEKQKFIHAISPTPASTMS 179

Query: 803 MTDL 814
             D+
Sbjct: 180 SVDI 183


>06_01_0327 + 2377121-2377812,2377911-2378265
          Length = 348

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 621 QDIILCHPKTSSLNGNHIEIRVCIKTIENVQHVLLH 728
           Q++I+ H KT    G  + I     T++ VQHV++H
Sbjct: 85  QELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIH 120


>06_01_0322 - 2335577-2335931,2336030-2336991
          Length = 438

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +3

Query: 621 QDIILCHPKTSSLNGNHIEIRVCIKTIENVQHVLLH 728
           Q++I+ H KT    G  + I     T++ VQHV++H
Sbjct: 175 QELIVNHNKTIDGRGAQVHITGAQITLQGVQHVIIH 210


>04_04_0384 -
           24853689-24853727,24853802-24853861,24854311-24854357,
           24854487-24854565,24855184-24855279,24855645-24855714,
           24855787-24855857,24856010-24856105,24856501-24856628,
           24856733-24856853
          Length = 268

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 143 KSGQFDLLLCVGTFFGDDNSQLDA 214
           KSG+FD +LC+G     D +  DA
Sbjct: 181 KSGKFDAILCIGAVIRGDTTHYDA 204


>11_01_0461 + 3569700-3572373,3572477-3572847
          Length = 1014

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 344 GLFNTSTDVKIAYLTGLSRRELGKDIPMCTYEP 442
           G+FN +T + IA   GL        +P+CTY P
Sbjct: 604 GIFNNTTAIWIAGNRGLCGGATKLHLPVCTYRP 636


>06_01_0733 +
           5405889-5405922,5405923-5405975,5406430-5406543,
           5407464-5407523,5408139-5408217,5410661-5410728,
           5411198-5411302,5411887-5411994,5412087-5412279,
           5412818-5412897,5413309-5413536,5414112-5414252,
           5414341-5414466,5414561-5414611,5414879-5414956,
           5415814-5415960,5416685-5417179
          Length = 719

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +2

Query: 278 HVHHYCEEGSEIVPNVIYMGRRGLFNTSTDV 370
           H+H + E+G +I P VI +  + +FN   +V
Sbjct: 38  HLHSFNEQGDQISPGVIPLAVKDIFNIIQEV 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,925,534
Number of Sequences: 37544
Number of extensions: 454575
Number of successful extensions: 1076
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2268190812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)