Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J20
         (825 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical ...   188   3e-48
U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat debr...    39   0.004
AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat debran...    39   0.004
Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical p...    30   2.3  
Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical pr...    30   2.3  
AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin monoox...    30   2.3  
AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical ...    29   5.3  
AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical ...    29   5.3  

>AF016417-2|AAB65279.2|  533|Caenorhabditis elegans Hypothetical
           protein F17A9.2 protein.
          Length = 533

 Score =  188 bits (459), Expect = 3e-48
 Identities = 97/248 (39%), Positives = 143/248 (57%)
 Frame = +2

Query: 71  KTLICGDVNGNFNALFTRVESIVKKSGQFDLLLCVGTFFGDDNSQLDAYKMGTRKVPVTT 250
           K L CGDVNGNF  L  ++ +  KK+G FD L CVG FFGDD+   +    G  + P+ T
Sbjct: 7   KILCCGDVNGNFVELIKKISTTEKKNGPFDSLFCVGEFFGDDDDSNEKVINGNIEFPIPT 66

Query: 251 YVFGPSNPDHVHHYCEEGSEIVPNVIYMGRRGLFNTSTDVKIAYLTGLSRRELGKDIPMC 430
           Y+ GP+NP + + Y EE  E   N+ Y+G++GL NT++ ++IAYL+G+     G    + 
Sbjct: 67  YILGPANPRYSYLYPEESIEFSSNLTYLGKKGLLNTASGLQIAYLSGVE----GSSKDLS 122

Query: 431 TYEPSDCSAVRDACFRGQSEFRGVDVLITTLWPSGIQQDECQKVDVEQDRLSDLLSWLAI 610
            ++ +D   +       Q  F G D+L+T++WP+ I +    +    Q   S LLS LA 
Sbjct: 123 CFDKADVEELL-IPLGTQVGFSGTDILLTSVWPADIARHSHNQPSKPQPG-SVLLSKLAA 180

Query: 611 HIKPRYHFVPSKDKFFERQPYRNQSMHQDYRECATRFIALXPVGNNLKEKWIYACSLQPI 790
           H+KPRYHF       +ERQPYRN  +  +     TRFI L  +GN  K+KW+YAC+++P+
Sbjct: 181 HLKPRYHFA-GLGVHYERQPYRNHRVLLEPARHTTRFIGLAAIGNPEKQKWLYACNVKPM 239

Query: 791 SXMRMTDL 814
             M   +L
Sbjct: 240 RKMEKEEL 247


>U63636-1|AAC47433.1|  500|Caenorhabditis elegans RNA lariat
           debranching enzyme protein.
          Length = 500

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
 Frame = +2

Query: 65  KQKTLICGDVNGNFNALFTRVESIVKKSG-QFDLLLCVGTF-----FGD----------- 193
           K +  + G  +G  +A++  +  I +K+G +FDLL+C G +     +GD           
Sbjct: 40  KIRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYR 99

Query: 194 DNSQLDAYKMGTRKVPVTTYVFGPSNPDHVHHYCE--EGSEIVPNVIYMGRRGLFNTSTD 367
                  Y  G +K PV T   G  N +   + CE   G  + PN+ YMG       + +
Sbjct: 100 SLQTFYKYYSGEQKAPVLTLFIG-GNHEASGYLCELPNGGWVAPNIYYMGFANCIRFA-N 157

Query: 368 VKIAYLTGL 394
           ++IA L+G+
Sbjct: 158 LRIAGLSGI 166


>AC006625-2|AAK68279.2|  500|Caenorhabditis elegans Lariat
           debranching enzyme relatedprotein 1 protein.
          Length = 500

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 35/129 (27%), Positives = 59/129 (45%), Gaps = 19/129 (14%)
 Frame = +2

Query: 65  KQKTLICGDVNGNFNALFTRVESIVKKSG-QFDLLLCVGTF-----FGD----------- 193
           K +  + G  +G  +A++  +  I +K+G +FDLL+C G +     +GD           
Sbjct: 40  KIRIAVVGCSHGEMDAIYETMTLIEQKNGYKFDLLICCGDYQAVRNYGDLPHMSIPPKYR 99

Query: 194 DNSQLDAYKMGTRKVPVTTYVFGPSNPDHVHHYCE--EGSEIVPNVIYMGRRGLFNTSTD 367
                  Y  G +K PV T   G  N +   + CE   G  + PN+ YMG       + +
Sbjct: 100 SLQTFYKYYSGEQKAPVLTLFIG-GNHEASGYLCELPNGGWVAPNIYYMGFANCIRFA-N 157

Query: 368 VKIAYLTGL 394
           ++IA L+G+
Sbjct: 158 LRIAGLSGI 166


>Z77663-14|CAB01214.2|  568|Caenorhabditis elegans Hypothetical
           protein F53F4.5 protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 116 FTRVESIVKKSGQF--DLLL-CVGTFFGDDNSQLDAYKMGTRKVPVTTYVFGPSNPDHV 283
           FT    IVK   +F  D+ L C G  FG      D  ++  ++VP+  YVF P N D V
Sbjct: 295 FTENSVIVKGGREFKCDIFLTCTGYTFGFPFVDSDIVEIKNQQVPLYKYVF-PPNSDSV 352


>Z30317-5|CAA82971.4| 1890|Caenorhabditis elegans Hypothetical
           protein T16G12.1 protein.
          Length = 1890

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = -2

Query: 704 LYSLDAYSDFYMVAVQRTCLWMAQNDILVLYVLQAKIVNLKADLAQHLPSDIHPVVYP 531
           L+  + ++D++M  +Q++        +  L VL    V L AD+      D HP+VYP
Sbjct: 409 LFLNEGFADYFMTFIQKSVYPQQATYLDTLQVLDELQVGLTADVRY----DAHPLVYP 462


>AJ581300-1|CAE46113.1|  568|Caenorhabditis elegans flavin
           monooxygenase protein.
          Length = 568

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
 Frame = +2

Query: 116 FTRVESIVKKSGQF--DLLL-CVGTFFGDDNSQLDAYKMGTRKVPVTTYVFGPSNPDHV 283
           FT    IVK   +F  D+ L C G  FG      D  ++  ++VP+  YVF P N D V
Sbjct: 295 FTENSVIVKGGREFKCDIFLTCTGYTFGFPFVDSDIVEIKNQQVPLYKYVF-PPNSDSV 352


>AF022977-3|AAB88609.1|  554|Caenorhabditis elegans Hypothetical
           protein ZK994.1 protein.
          Length = 554

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = -3

Query: 520 CCYQYIYSSKFTLSSETCISDSTTVTGLISTHRNVF 413
           C Y  +YS+K+ + ++ C       +GL+ +H + F
Sbjct: 103 CLYINVYSNKYCIENKNCSVMVVVPSGLVQSHGSFF 138


>AC024136-3|AAF35959.2|  470|Caenorhabditis elegans Hypothetical
           protein F54A3.6 protein.
          Length = 470

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 620 PRYHFVPSKDKFFERQPYRNQS 685
           PRYH  P +D+F +R P R  S
Sbjct: 131 PRYHSGPREDRFSDRNPPREHS 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,781,260
Number of Sequences: 27780
Number of extensions: 439895
Number of successful extensions: 1088
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1057
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1085
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2040452812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)