Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J18
(844 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 30 0.47
SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr 2|... 27 4.4
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 5.8
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 26 5.8
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 26 7.7
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 26 7.7
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 26 7.7
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 26 7.7
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 26 7.7
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 26 7.7
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 26 7.7
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 26 7.7
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 26 7.7
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 26 7.7
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 26 7.7
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 26 7.7
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 26 7.7
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 29.9 bits (64), Expect = 0.47
Identities = 24/105 (22%), Positives = 49/105 (46%), Gaps = 7/105 (6%)
Frame = +1
Query: 403 NCPSGELRMAKLVPSPYGDNQSMKSWY--HVHCFTDVLLKQRPNTKRVES-----INDIG 561
N P EL A L + + MK+ Y V + +++ +R E+ + +
Sbjct: 386 NVPDAELDEAGLRQKRH--QRLMKANYDARVRAKAEKAIEEAAEAERAEADERLRLENFS 443
Query: 562 NWDNISKEDQELILKKLNETEKLYAEKHSGKYTAKLIENKSLGSI 696
W N +E +++L+K+++ ++L E + K A + KSL ++
Sbjct: 444 TWVNEKRETHKILLEKISKNKRLKFELNDRKSHASQMRMKSLATL 488
>SPBC2A9.08c |sec22||SNARE Sec22|Schizosaccharomyces pombe|chr
2|||Manual
Length = 209
Score = 26.6 bits (56), Expect = 4.4
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 544 SINDIGNWDNIS--KEDQELILKKLNETEKLYAEKHSGKYTAK-LIEN 678
S++D N+ K+ +LILK+L+ T + A SG YT LI+N
Sbjct: 12 SVDDESTERNLESHKKQAKLILKRLSPTSEKRASIESGDYTFHYLIDN 59
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 5.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 565 WDNISKEDQELILKKLNETEKLYAEKHSGKYTAKLIENK 681
W+N+SKE E++L + E E LY E K +E++
Sbjct: 155 WENVSKEFLEIVL-TIIEREWLYLEAWMPKIEPVRVEDE 192
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.2 bits (55), Expect = 5.8
Identities = 23/98 (23%), Positives = 45/98 (45%)
Frame = +1
Query: 529 TKRVESINDIGNWDNISKEDQELILKKLNETEKLYAEKHSGKYTAKLIENKSLGSIKKNS 708
T+ ++ ++ + + +D E ++ KL TE AE+ K+ + EN+ S+ K
Sbjct: 545 TQELQDTKEVLSKSSKESDDYEEVVGKLR-TE---AEREIEKFEKTIRENEESISLFKEE 600
Query: 709 VKSEPDTTDSGNIVXDNKFSTFIELCKRIAKVDAYTEK 822
V+ D + ++K F EL KR+ ++ K
Sbjct: 601 VEKLTDEITQLSERYNDKCHEFDELQKRLQTLEEENNK 638
>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 462
Score = 26.2 bits (55), Expect = 5.8
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Frame = +1
Query: 637 EKHSGKYTAKLIENKSLG---SIKKNSVKSEPDTTDSGNI 747
EKHS T + I K ++ KN++ SEP+T NI
Sbjct: 404 EKHSLNSTPESIMKKDTKWPQNLAKNNINSEPNTPTKSNI 443
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 25.8 bits (54), Expect = 7.7
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +2
Query: 233 ASKPVTTGLVSDVLSIQHIFLSVSLPHWHS*SQCPIQHRFT*IEPKVVGQHVNYVKATVL 412
AS + G+++D + + + L H Q PI T +VVG++V Y KAT++
Sbjct: 279 ASGDIRGGILADEMGMGKTLEVLGLVLHH---QLPISLTDTCTFDQVVGKNVKYSKATLI 335
Query: 413 V 415
+
Sbjct: 336 I 336
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 25.8 bits (54), Expect = 7.7
Identities = 29/100 (29%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
Frame = +1
Query: 532 KRVESINDIGNWD-NISKEDQELILKKLNETEKLYAEKHSGKYTAKLIENKSLGSIKKNS 708
+ V +ND ++D N E I K + E E + AE+H + + I +K S+K
Sbjct: 704 RNVRGVNDGQDFDRNFLSE----IYKAIKENEIIVAEEHDTELSFLYIWSKLQQSVK--- 756
Query: 709 VKSEPDTTDSGNIVXDNKFSTFIELCKRIAKVDAYTEKTA 828
+EP S N+ +K F+E+ K I Y TA
Sbjct: 757 -ITEPFKRSSSNV--HDKI-VFLEVWKSIMAALIYVFSTA 792
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 25.8 bits (54), Expect = 7.7
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Frame = -1
Query: 145 YGFFYKNNIN---YGLKCAITTLILKTVFLVFSSFQYTRR*KFKT*Y 14
YG Y N IN L ++ + +KT FLV F + F T Y
Sbjct: 300 YGGVYPNKINRKTIKLNISLNGISIKTEFLVVKKFSHPAAISFTTLY 346
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,329
Number of Sequences: 5004
Number of extensions: 61989
Number of successful extensions: 216
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 416455520
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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