Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J18
(844 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0634 + 30746767-30747012,30747083-30747118,30747554-307478... 52 8e-07
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 33 0.38
09_01_0067 + 1001137-1002708,1003476-1003529 31 1.5
11_06_0715 + 26552962-26553510,26553578-26555746 29 3.5
12_02_0770 - 23007202-23007333,23007475-23007555,23007642-230077... 29 6.1
03_05_1059 - 30020877-30021539,30022367-30022375 29 6.1
02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981 28 8.1
02_01_0353 + 2545982-2549833 28 8.1
>01_06_0634 +
30746767-30747012,30747083-30747118,30747554-30747850,
30748482-30748544,30748643-30748696,30748837-30748854,
30749554-30749625,30749731-30749787,30750160-30750236,
30751013-30751094,30751585-30751701,30752083-30752210,
30753074-30753143,30753725-30753765,30753963-30753990,
30754151-30754210
Length = 481
Score = 51.6 bits (118), Expect = 8e-07
Identities = 28/91 (30%), Positives = 49/91 (53%)
Frame = +1
Query: 355 VDRAKGGRAACKLCKGNCPSGELRMAKLVPSPYGDNQSMKSWYHVHCFTDVLLKQRPNTK 534
V+ AK GR++CK+C G LR+ P G + + WYHV CF ++
Sbjct: 17 VEYAKSGRSSCKVCSEGIAKGALRLGASARDPRGFDST--KWYHVACFPS-------SSH 67
Query: 535 RVESINDIGNWDNISKEDQELILKKLNETEK 627
++ + + +D+I +ED+E + ++LN+T K
Sbjct: 68 PIDPVEKVKGFDSIKEEDREEV-RELNKTCK 97
Score = 49.2 bits (112), Expect = 4e-06
Identities = 28/95 (29%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 331 MSDSTPFYVDRAKGGRAACKLCKGNCPSGELRMAKLVPSPYGDNQSMKSWYHVHCFTDVL 510
++++ V+ AK GR+ CK C + +G LR+ + P G + + WYH+ CF
Sbjct: 120 VAENVSISVEYAKSGRSTCKGCSESIAAGALRLGASIRDPRGFDST--KWYHIACFPSST 177
Query: 511 LKQRP--NTKRVESINDIGNWDNISKEDQELILKK 609
P N K +SI + N++ + E LKK
Sbjct: 178 YPAFPVENLKGFDSIENCKRDGNVTDQLNEQNLKK 212
>07_03_0061 +
12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 32.7 bits (71), Expect = 0.38
Identities = 24/99 (24%), Positives = 42/99 (42%)
Frame = +1
Query: 307 ASLAFIIAMSDSTPFYVDRAKGGRAACKLCKGNCPSGELRMAKLVPSPYGDNQSMKSWYH 486
A+ + A+SD V AK R +C+ C G +R++ + + WYH
Sbjct: 68 ATASSAAAISDKCTIEV--AKSARTSCRRCGEKIKKGTVRVSSKLEG--------QGWYH 117
Query: 487 VHCFTDVLLKQRPNTKRVESINDIGNWDNISKEDQELIL 603
CF L+ P ++ + W+ +S ED+ +L
Sbjct: 118 ASCF----LEMSP----AATVENFSGWEILSHEDKRAVL 148
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 364 AKGGRAACKLCKGNCPSGELRMAKLV 441
AK GR++CK C+ +LR+ K++
Sbjct: 13 AKSGRSSCKSCRSPIGKDQLRLGKMM 38
>09_01_0067 + 1001137-1002708,1003476-1003529
Length = 541
Score = 30.7 bits (66), Expect = 1.5
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Frame = +1
Query: 469 MKSWYHVHCFTDVLLKQRPNTKRVESINDIGNWDNISKE-DQELILKKLNETEKL 630
+K Y+ CF+ L+ PN K ++ I G+WD + ++ Q+ +L +L+ EKL
Sbjct: 223 LKELYNGQCFSS-LITNSPNLKTLKIIRCSGDWDPVLQDLPQDAMLAELH-LEKL 275
>11_06_0715 + 26552962-26553510,26553578-26555746
Length = 905
Score = 29.5 bits (63), Expect = 3.5
Identities = 23/75 (30%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Frame = +1
Query: 439 VPSPYGDNQSMKSWYHVHCFTDVLLKQRPNTKRVESINDIGNWDNISKEDQELI--LKKL 612
+P+ GD ++K H+ D ++K PN+ +E ++++ D E QEL + KL
Sbjct: 581 IPNVIGDLFNLK---HLS-LRDSMVKFLPNS--IEKLSNLMTLDLCKSEIQELPGGIVKL 634
Query: 613 NETEKLYAEKHSGKY 657
+ L+AEK +GK+
Sbjct: 635 KKLRHLFAEKLNGKF 649
>12_02_0770 -
23007202-23007333,23007475-23007555,23007642-23007742,
23007855-23008455,23008742-23009365,23010294-23010377
Length = 540
Score = 28.7 bits (61), Expect = 6.1
Identities = 26/99 (26%), Positives = 48/99 (48%), Gaps = 1/99 (1%)
Frame = +1
Query: 547 INDIGNWDNISKEDQELILKKLNETEKLYAEKHSGKYTAKLIENKSLGS-IKKNSVKSEP 723
++D G + + +E K + ++K A+K K T+ I+N + S K++ K
Sbjct: 306 LDDFGTSEGVEVHTREPAKKTGSSSKKNAAKKAKTKSTSYEIDNDFVTSRSKRDGNKRSR 365
Query: 724 DTTDSGNIVXDNKFSTFIELCKRIAKVDAYTEKTAAVNS 840
++TD+ N + + ++ EL + K A TE A V S
Sbjct: 366 ESTDADN--SEEEPTSDSELDAQNRKQKAVTESPANVRS 402
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 28.7 bits (61), Expect = 6.1
Identities = 17/42 (40%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Frame = -1
Query: 700 SLWSLKICFQLVSLCISHCVFLRTIFQFRL-IFLVSILDLPY 578
SL+ + + L SL I HC+ R++F FRL I+L+ I+ + Y
Sbjct: 117 SLFDVALQNNLASL-ICHCILFRSLFCFRLIIWLMFIIYICY 157
>02_01_0361 - 2600398-2602780,2602815-2603479,2603553-2603981
Length = 1158
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 401 ATVLVVNYVWPNLYRARMAIIN 466
A V ++NYVWPN++ +IN
Sbjct: 1061 ALVHLLNYVWPNIFETSPHVIN 1082
>02_01_0353 + 2545982-2549833
Length = 1283
Score = 28.3 bits (60), Expect = 8.1
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +2
Query: 401 ATVLVVNYVWPNLYRARMAIIN 466
A V ++NYVWPN++ +IN
Sbjct: 1186 ALVHLLNYVWPNIFETSPHVIN 1207
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,006,625
Number of Sequences: 37544
Number of extensions: 329054
Number of successful extensions: 774
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 750
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 772
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2338704516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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