Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J14
         (729 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    34   0.018
SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    33   0.055
SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    31   0.22 
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    28   1.6  
SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA reductase|Schi...    27   2.7  
SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2 |Schizosacc...    26   4.8  
SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr 1|...    26   4.8  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.3  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    26   6.3  
SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces po...    26   6.3  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    26   6.3  

>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 34.3 bits (75), Expect = 0.018
 Identities = 23/86 (26%), Positives = 42/86 (48%)
 Frame = -1

Query: 393 SEIMATADCVSPKPWITAGLPVTEPTTSRTFALGSTVSTTNAPSLKTTSLIPS*VFNVLI 214
           S I+ T+   S     T+GLP +  +T  + +  +  ST  +    TTS +P+   +  +
Sbjct: 674 SSIVPTSTFTSSGFNTTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTTSGLPTSSVSTPL 733

Query: 213 VFSRNWSSTDESKFTRTSSLVVSIVV 136
             S  + S+  S F+R SS + S ++
Sbjct: 734 SNSSAYPSSGSSTFSRLSSTLTSSII 759



 Score = 26.2 bits (55), Expect = 4.8
 Identities = 23/94 (24%), Positives = 41/94 (43%)
 Frame = -1

Query: 525 SPDSYTWSPCLPGLSPSMLPSATRGPSAVCCSLTTPRILLQHDWSEIMATADCVSPKPWI 346
           S   Y  S  LP  +PS  P ++   +    + +TP   +    +    T+   +P   +
Sbjct: 272 SSAQYNTSSLLPSSTPSSTPLSSANSTTATSASSTPLTSV----NSTTTTSASSTPLSSV 327

Query: 345 TAGLPVTEPTTSRTFALGSTVSTTNAPSLKTTSL 244
           ++    T  +TS T    S+V++T A S  +T L
Sbjct: 328 SSANSTTATSTSSTPL--SSVNSTTATSASSTPL 359


>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 32.7 bits (71), Expect = 0.055
 Identities = 29/88 (32%), Positives = 46/88 (52%), Gaps = 8/88 (9%)
 Frame = -1

Query: 375 ADCVSPKPWITAGLPV-TEPTTSRTFALGSTVSTTNAPSLKT----TSLIPS*V---FNV 220
           ++C+   P+ +  +PV  +P++S + A  ST STT++ SL +    TS  PS V    ++
Sbjct: 91  SECIYNGPYYSQCIPVDIDPSSSSSSAASSTTSTTSSSSLVSSTTLTSSSPSAVSSTTSI 150

Query: 219 LIVFSRNWSSTDESKFTRTSSLVVSIVV 136
             + S   SS   S FT  SS   S V+
Sbjct: 151 PSISSTISSSVSTSSFTSLSSSGFSTVL 178


>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 23/118 (19%), Positives = 49/118 (41%), Gaps = 3/118 (2%)
 Frame = +2

Query: 374 AVAMISDQSCCNKILGVVRLQQTAEGPLVADGSIDGLSPGRHGLHVYESGDLSQGCNSIX 553
           AVA++   S  + ++   ++ Q ++  ++ D  +   +  + G H+++ GD + GC S  
Sbjct: 4   AVAVLRGDSKVSGVVTFEQVDQNSQVSVIVD-LVGNDANAKRGFHIHQFGDNTNGCTS-- 60

Query: 554 XXXXXXXXXXXXXXXXXXXXXXXXLGNITADANGRAAFRIVDDVLKVW---DVIGXSV 718
                                   LGN+ +DA G       D V+ ++    +IG ++
Sbjct: 61  AGPHFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTI 118


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1564

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 14/30 (46%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
 Frame = -3

Query: 220  LNSLLEELVINRRIEVHQDL-*LSSQHRCL 134
            L+ L E+ VIN  IEV+ D+  L+S H+C+
Sbjct: 1343 LSQLFEKAVINPTIEVYGDIVLLNSLHKCI 1372


>SPCC162.09c |hmg1||3-hydroxy-3-methylglutaryl-CoA
           reductase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1053

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +2

Query: 398 SCCNKILGVVRLQQTAEGPLVADG 469
           +CC  ++G + L     GPL+ DG
Sbjct: 678 ACCENVIGYMPLPLGVAGPLIIDG 701


>SPAC9E9.03 |leu2||3-isopropylmalate dehydratase Leu2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 758

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 302 NVLDVVGSVTGRPAVIQGFGETQSAVAMISDQSCCN 409
           +++ V+G+  G  +VI+  GE    ++M +  S CN
Sbjct: 198 HIIGVIGTAGGTGSVIEFCGEAIEGLSMEARMSMCN 233


>SPAC3G6.03c |||Maf-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = +2

Query: 143 MLTTKLEVLVNFDSSVDDQFLEKTIKTLKTHDGIKEVVFK-DGAFVVETVL 292
           M T   E  V FD S+ D+FLE  ++  +  D       +  GA ++E+++
Sbjct: 155 MKTHLEETQVKFDPSITDEFLEAYVRCGEGSDKAGGYAIQGHGALLIESII 205


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 11/33 (33%), Positives = 23/33 (69%)
 Frame = -1

Query: 345 TAGLPVTEPTTSRTFALGSTVSTTNAPSLKTTS 247
           ++ L  ++P TS TF+  S+ ++++ PS+ +TS
Sbjct: 161 SSSLSSSDPLTSSTFSSLSSSTSSSQPSVSSTS 193


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 9/30 (30%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +1

Query: 79  YFKCVQTYVYIPEDI-FNITNNDADY*ARG 165
           YF+  +TY+Y+P ++ +++ +N   Y + G
Sbjct: 303 YFQTRETYIYLPAELAYSVMDNAGAYLSEG 332


>SPCC16C4.10 |||6-phosphogluconolactonase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 257

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 25/95 (26%), Positives = 35/95 (36%), Gaps = 3/95 (3%)
 Frame = -1

Query: 453 GPSAVCCSLTTPRILLQHDWSEIMATADCVS-PKPWITAGLPVTEPTTSRTFALGSTVST 277
           GP    CSL     +LQ D + +    D    PK  IT  LPV     +  F        
Sbjct: 149 GPDGHTCSLFPDHEVLQEDVAWVAPVTDSPKPPKDRITLTLPVVTHAQAIAFVTTGAGKK 208

Query: 276 TNAPSL--KTTSLIPS*VFNVLIVFSRNWSSTDES 178
              P +    TS +PS +     +   +W   DE+
Sbjct: 209 DILPIVIEDFTSKLPSALITRNNLTRTSWFVDDEA 243


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 705  ITSHTFRTSSTILNAALPFASAVMFPRSP 619
            + S T  TSST+LN++ P  S+     SP
Sbjct: 1626 LNSSTPITSSTVLNSSTPITSSTALNTSP 1654


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,655,400
Number of Sequences: 5004
Number of extensions: 51564
Number of successful extensions: 320
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 300
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)