Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J07
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    30   0.20 
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    27   1.1  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    27   1.1  
SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr 1|||Ma...    27   1.9  
SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces po...    27   1.9  
SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    25   5.8  

>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 29.9 bits (64), Expect = 0.20
 Identities = 16/46 (34%), Positives = 25/46 (54%)
 Frame = +1

Query: 82  INRRLLV*NTTIIXNYIMPHFRIETNISRSKIPADFVVKAIPVLAK 219
           +NR L    TT   N ++PH+  + ++   K+ ADFV     +LAK
Sbjct: 612 VNRTLKF--TTAKYNGLVPHYLTDPSVGAGKLKADFVKDVNALLAK 655


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = -3

Query: 389 IDYYGSTSFLAIYPMVWILFFIMFIQRSRG 300
           +D++    F AI  + W   FI+F+++++G
Sbjct: 88  VDFHAGYCFAAILSISWATGFILFLKKTQG 117


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -1

Query: 115  LLCFKREDVDLFRRNAKFTIFSMS*RLEIQYKQ--NHRP 5
            LL  K EDV++++RNA   I      + I  KQ  +HRP
Sbjct: 1315 LLEVKNEDVNIYKRNALLFILKALAEMRILDKQSWHHRP 1353


>SPAC23C11.06c |||hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 535

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
 Frame = +1

Query: 136 PHF-RIETNISRSKIPADFVVKAIPV--LAKALGKPEQHVHNLPRRTYRQRWI*RNDFPR 306
           P F R E   ++S +P D  V  I      K   K       L + T R  W   N+ P 
Sbjct: 450 PSFSRYELQSAQSVLPKDLPVSVISAGKSMKRFKKWPDEQRQLSKLTQRTVWDIVNNAPH 509

Query: 307 DLWIN 321
           D+W++
Sbjct: 510 DVWLS 514


>SPCP1E11.05c |||sterol O-acyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 472

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 22/88 (25%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = -1

Query: 403 ILSIL*IIMEAHHFSLFILWFGYCFL*CLSKDRVESRSFKSNVAGRFVLEGYVHAVQVYQ 224
           IL  + I+M+ H +++   W+ YC+    S ++++S+    +   R  +E Y H +  + 
Sbjct: 171 ILHSMVILMKLHSYNVVNGWYSYCY---HSLNKLQSKKTDLDDDERSSVEFYEHCLNHHG 227

Query: 223 EL*LTPV*LLPQNQLGFLILK--CWFLF 146
                P  L   N L FL +   C+ L+
Sbjct: 228 N--TYPENLTIPNALDFLFMPSLCYQLY 253


>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 148 IETNISRSKIPADFVVKA-IPVLAKALGKPEQHVHNLPRR 264
           + TN  R +     ++ A + V AKA GK E H+++  RR
Sbjct: 133 VVTNDMRIEHKRGIIIAAYLLVSAKAFGKDELHINHTERR 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,985
Number of Sequences: 5004
Number of extensions: 35324
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)