Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J07
         (472 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0956 + 29644425-29645579                                         29   2.5  
06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709     28   3.3  

>04_04_0956 + 29644425-29645579
          Length = 384

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 21/74 (28%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +1

Query: 154 TNISRSKIPADFVVK--AIPVLAKALGKPEQHVHNLPRRTYRQRWI*RNDFPRDLWINII 327
           +++ R K PA F +   A  V A  L   E     + R T   RW+ R      LW N++
Sbjct: 189 SSVPRGKYPAGFALTLAASAVFALILSLFEATFEKVVR-TRTLRWVLR----AQLWTNVV 243

Query: 328 KNNIQTIG*IARND 369
            + +  +G +A  D
Sbjct: 244 ASTVSAVGLLASGD 257


>06_03_1272 - 28887034-28887069,28887282-28887482,28887599-28887709
          Length = 115

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +1

Query: 133 MPHFRIETNIS-RSKIPADFVVKAIPVLAKALGKPEQHV 246
           MP   + TN+   + + AD +      LA+ +GKPE +V
Sbjct: 1   MPQLSLTTNVPVDAVVAADIIKDCSKALARIIGKPESYV 39



 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 218 KLLVNLNSMYITFQDEPTGNVGFKGTTF 301
           KL V+ +  Y+ F D    N+GF G+TF
Sbjct: 88  KLSVSRSRFYVKFDDVKGFNLGFNGSTF 115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,338,102
Number of Sequences: 37544
Number of extensions: 192408
Number of successful extensions: 352
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 352
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)