Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P08_F_J07
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78012-2|CAB01412.1|  120|Caenorhabditis elegans Hypothetical pr...    41   4e-04
Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical pr...    29   2.2  
Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical pr...    27   9.0  
AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical...    27   9.0  
AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm rece...    27   9.0  

>Z78012-2|CAB01412.1|  120|Caenorhabditis elegans Hypothetical
           protein C52E4.2 protein.
          Length = 120

 Score = 41.1 bits (92), Expect = 4e-04
 Identities = 14/38 (36%), Positives = 25/38 (65%)
 Frame = +1

Query: 133 MPHFRIETNISRSKIPADFVVKAIPVLAKALGKPEQHV 246
           MP  R+ TN+   K+P DF ++   +LA+++GKP + +
Sbjct: 1   MPMVRVATNLPNEKVPVDFEIRLTDLLARSMGKPRERI 38



 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +2

Query: 209 C*LKLLVNLNSMYITFQDEPTGNVGFKGTT 298
           C  +L +  + + ITF D P   VGF GTT
Sbjct: 84  CGKELGLPKDKVVITFHDLPPATVGFNGTT 113


>Z78198-6|CAB01572.2|  848|Caenorhabditis elegans Hypothetical
           protein F55C5.7 protein.
          Length = 848

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +1

Query: 130 IMPHFRIET--NISRSKIPADFVVKAIPVLAKALGKPEQHVHNLPRRTYR 273
           + P  R  T  NI   + PAD++V A  ++A A    E+H + L  + Y+
Sbjct: 231 LFPRLRGSTHHNIEIEETPADYLVTAGQLVATAQRAEEEHAYELAFQCYK 280


>Z83123-8|CAB05613.2|  330|Caenorhabditis elegans Hypothetical
           protein T04A11.10 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 200 LYRC*LKLLVNLNSMYITFQDEP 268
           +Y   L L+VNLNS Y  FQ +P
Sbjct: 1   MYTSKLGLIVNLNSNYTNFQFDP 23


>AL132949-22|CAB70112.2|  603|Caenorhabditis elegans Hypothetical
           protein Y53F4B.25 protein.
          Length = 603

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +1

Query: 166 RSKIPADFVVKAIPVLAKALGKPEQHVHNLPRRTYRQ 276
           +S  P D+ V ++ V+ K    P+Q   ++P +T  Q
Sbjct: 372 KSTPPIDYSVDSVAVVTKDQRPPQQFFRSIPEKTSEQ 408


>AF016432-5|AAB65378.1|  347|Caenorhabditis elegans Seven tm
           receptor protein 225 protein.
          Length = 347

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 348 YGLDIVFYNVYPKIAWKVVPLNPTLPVGSSWKVM 247
           YG  +  ++++    W VV  NP L   + WK++
Sbjct: 102 YGASMAVFSLHFIYRWLVVTENPLLETFNGWKII 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,530,813
Number of Sequences: 27780
Number of extensions: 187212
Number of successful extensions: 455
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 455
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)