Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P08_F_J06
(800 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 207 1e-54
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 59 6e-10
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 41 2e-04
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 27 4.1
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce... 27 4.1
SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+, L-... 26 5.4
SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces po... 26 5.4
SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|c... 26 5.4
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 9.5
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 207 bits (506), Expect = 1e-54
Identities = 107/160 (66%), Positives = 119/160 (74%), Gaps = 1/160 (0%)
Frame = +3
Query: 321 DNLPPILNALEVQ-NRSPRLVLEVAQHLGENTVRTIAMDGTEGLVRGQPVLXSGSPIRIP 497
D+LP ILNALEV+ + RLVLEVAQH+GENTVRTIAMDGTEGLVRG V+ +GSPI IP
Sbjct: 73 DSLPSILNALEVKLPDNKRLVLEVAQHVGENTVRTIAMDGTEGLVRGTAVIDTGSPISIP 132
Query: 498 VGAETLGRIINVIGEPIDERGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 677
VG TLGRI+NVIGEP+DERGPI K + IHA+AP F + S EIL TGIKVVDLLAP
Sbjct: 133 VGPGTLGRIMNVIGEPVDERGPIKAVKYSPIHADAPSFEEQSTTPEILETGIKVVDLLAP 192
Query: 678 YAXXXXXXXXXXXXXXXTVLIMELINNVAKAHGGYSVFAG 797
YA TV I ELINN+AKAHGGYSVF G
Sbjct: 193 YARGGKIGLFGGAGVGKTVFIQELINNIAKAHGGYSVFTG 232
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 59.3 bits (137), Expect = 6e-10
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)
Frame = +3
Query: 387 VAQHLGENTVRTIAMDGTEGLVR-GQPVLXSGSPIRIPVGAETLGRIINVIGEPIDERGP 563
+A +L +TV + G + LVR G+ V + + +PVG LGR+++ +G PID +GP
Sbjct: 90 MALNLEADTVGCVLF-GNDRLVREGEVVKRTRHIVDVPVGEALLGRVVDALGNPIDGKGP 148
Query: 564 IPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVDLLAP 677
I T + + +AP + + E + TG+K +D + P
Sbjct: 149 IKTTERRRVQLKAPGILPRTSVCEPMQTGLKAIDSMVP 186
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 40.7 bits (91), Expect = 2e-04
Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 1/97 (1%)
Frame = +3
Query: 378 VLEVAQHLGENTVRTIAMDGTEGL-VRGQPVLXSGSPIRIPVGAETLGRIINVIGEPIDE 554
VLEVA H V +GT G+ VR + +G +RIPV + LGR+ N G PID+
Sbjct: 63 VLEVAGHKAIVQV----FEGTSGVDVRKTTIDFTGHSMRIPVSEDMLGRVFNGSGLPIDK 118
Query: 555 RGPIPTDKTAAIHAEAPEFVDMSVQQEILVTGIKVVD 665
+ + I+ +E++ TGI +D
Sbjct: 119 GPNLLAEDYLDINGSPINPYARIYPEEMIQTGISSID 155
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.9 bits (69), Expect = 0.11
Identities = 24/90 (26%), Positives = 38/90 (42%)
Frame = -2
Query: 652 IPVTRISCCTDMSTNSGASAWIAAVLSVGMGPRSSIGSPITLMMRPRVSAPTGIRMGEPX 473
+P T SC T S +G S+ ++ ++ + P S+ + I + S T P
Sbjct: 222 LPTTSTSCTTSTSIPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTN-SSPLPT 280
Query: 472 SSTGCPRTKPSVPSMAMVRTVFSPKCCATS 383
+ST C T S+P T +P TS
Sbjct: 281 TSTSC-TTSTSIPPTGNSTTPVTPTVPPTS 309
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 26.6 bits (56), Expect = 4.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Frame = -2
Query: 568 GMGPRSSIGSPITLMMRPRVSAPTGIRMGEPXSSTGCPRTKPSVPSMA 425
G G ++S+GS + R+ PT MG S+ G T P+ A
Sbjct: 487 GHGSQTSLGSIKRKSIMERMGRPTSPFMGSSFSNMGSRSTSPTKEGFA 534
>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2104
Score = 26.6 bits (56), Expect = 4.1
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -1
Query: 113 LVERQQSRIELVTKITNSLRNDPSSAD 33
LVER SR+E+V + +SL N + AD
Sbjct: 889 LVERANSRVEVVHERLSSLENQVTIAD 915
>SPAC227.18 |lys3|SPAC2F7.01|saccharopine dehydrogenase [NAD+,
L-lysine forming] |Schizosaccharomyces pombe|chr
1|||Manual
Length = 368
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -3
Query: 348 GHLGSAASCLQTEHPLRHQ*RQLP 277
G GSA SCL H L H +Q P
Sbjct: 140 GFAGSAISCLVWAHQLLHPNKQFP 163
>SPAC343.05 |vma1||V-type ATPase subunit A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 5.4
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 438 TEGLVRGQPVLXSGSPIRIPVGAETLGRIINVIGEPIDE 554
T GL G PV +G P+ + +G I + I P+ +
Sbjct: 77 TSGLTVGDPVQRTGKPLSVELGPGLAETIYDGIQRPLKQ 115
>SPBC543.04 |||UPF0171 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 5.4
Identities = 13/52 (25%), Positives = 23/52 (44%)
Frame = +1
Query: 13 DTARIRPSALDGSLRKEFVIFVTSSILLCCLSTKFSKILSKCFLLSAE*AVW 168
DT R L SL F+ V ++ ++ + +S+CF+L+ W
Sbjct: 329 DTIMKRVPLLQNSLLSSFIAIVKPNLTFTDIANRLGISVSECFILAKHLIHW 380
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 9.5
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -2
Query: 229 TAAPVTSDAFSVALFTTVFVAKRPTLQT 146
T + VTS+A S A V +K+P L+T
Sbjct: 521 TESAVTSEALSAARLEAVKASKKPPLRT 548
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,425,562
Number of Sequences: 5004
Number of extensions: 72341
Number of successful extensions: 202
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 201
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 388424860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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